{ "bcoid": "GLY_000101", "title": "Human UniProtKB Xref GeneCards", "description": "The Human UniProtKB Xref GeneCards contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_genecards.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Genecards cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "protein_xref..." ], [ "Q8TBF4-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "Q8TBF5-1", "protein_xref_genecards", "PIGX", "" ], [ "Q8TBF4-1", "protein_xref_genecards", "ZCRB1", "" ], [ "Q9NRJ4-1", "protein_xref_genecards", "TULP4", "" ], [ "Q9NQ79-1", "protein_xref_genecards", "CRTAC1", "" ], [ "Q9NVL8-1", "protein_xref_genecards", "CCDC198", "" ], [ "Q9NRQ5-1", "protein_xref_genecards", "SMCO4", "" ], [ "Q8IZF5-1", "protein_xref_genecards", "ADGRF3", "" ], [ "P30613-1", "protein_xref_genecards", "PKLR", "" ], [ "Q5H9L4-1", "protein_xref_genecards", "TAF7L", "" ], [ "Q9BZL4-1", "protein_xref_genecards", "PPP1R12C", "" ], [ "Q9NVL1-1", "protein_xref_genecards", "FAM86C1", "" ], [ "Q5QJ38-1", "protein_xref_genecards", "TCHHL1", "" ], [ "Q9NQ75-1", "protein_xref_genecards", "CASS4", "" ], [ "P20930-1", "protein_xref_genecards", "FLG", "" ], [ "P20933-1", "protein_xref_genecards", "AGA", "" ], [ "P20936-1", "protein_xref_genecards", "RASA1", "" ], [ "A0A1W2PQ27-1", "protein_xref_genecards", "SSU72P7", "" ], [ "Q8NFX7-1", "protein_xref_genecards", "STXBP6", "" ], [ "Q9UM21-1", "protein_xref_genecards", "MGAT4A", "" ], [ "Q496A3-1", "protein_xref_genecards", "SPATS1", "" ], [ "P83859-1", "protein_xref_genecards", "QRFP", "" ], [ "P40617-1", "protein_xref_genecards", "ARL4A", "" ], [ "Q70EL4-1", "protein_xref_genecards", "USP43", "" ], [ "Q8TBF2-1", "protein_xref_genecards", "PRXL2B", "" ], [ "Q15573-1", "protein_xref_genecards", "TAF1A", "" ], [ "Q15572-1", "protein_xref_genecards", "TAF1C", "" ], [ "Q9BQP9-1", "protein_xref_genecards", "BPIFA3", "" ], [ "Q9H999-1", "protein_xref_genecards", "PANK3", "" ], [ "P23919-1", "protein_xref_genecards", "DTYMK", "" ], [ "Q8NHX4-1", "protein_xref_genecards", "SPATA3", "" ], [ "Q8NHX9-1", "protein_xref_genecards", "TPCN2", "" ], [ "A8MU46-1", "protein_xref_genecards", "SMTNL1", "" ], [ "Q6ZNW5-1", "protein_xref_genecards", "GDPGP1", "" ], [ "Q9NXR8-1", "protein_xref_genecards", "ING3", "" ], [ "Q9C0H2-1", "protein_xref_genecards", "TTYH3", "" ], [ "Q9C0H5-1", "protein_xref_genecards", "ARHGAP39", "" ], [ "Q4VXU2-1", "protein_xref_genecards", "PABPC1L", "" ], [ "Q9C0H6-1", "protein_xref_genecards", "KLHL4", "" ], [ "Q9C0H9-5", "protein_xref_genecards", "SRCIN1", "" ], [ "Q9NXR1-2", "protein_xref_genecards", "NDE1", "" ], [ "Q00537-1", "protein_xref_genecards", "CDK17", "" ], [ "Q00536-1", "protein_xref_genecards", "CDK16", "" ], [ "Q9NXR5-1", "protein_xref_genecards", "ANKRD10", "" ], [ "Q00532-1", "protein_xref_genecards", "CDKL1", "" ], [ "Q96J66-1", "protein_xref_genecards", "ABCC11", "" ], [ "O00244-1", "protein_xref_genecards", "ATOX1", "" ], [ "Q9UBM8-1", "protein_xref_genecards", "MGAT4C", "" ], [ "Q9H2V7-1", "protein_xref_genecards", "SPNS1", "" ], [ "O00241-1", "protein_xref_genecards", "SIRPB1", "" ], [ "O00716-1", "protein_xref_genecards", "E2F3", "" ], [ "Q8IX01-1", "protein_xref_genecards", "SUGP2", "" ], [ "Q3LI54-1", "protein_xref_genecards", "KRTAP19-8", "" ], [ "Q9UBM1-1", "protein_xref_genecards", "PEMT", "" ], [ "A8MTA8-1", "protein_xref_genecards", "FAM166B", "" ], [ "Q9UBM4-1", "protein_xref_genecards", "OPTC", "" ], [ "P24522-1", "protein_xref_genecards", "GADD45A", "" ], [ "Q13835-1", "protein_xref_genecards", "PKP1", "" ], [ "Q7Z3T1-1", "protein_xref_genecards", "OR2W3", "" ], [ "A0AVF1-1", "protein_xref_genecards", "TTC26", "" ], [ "P40424-1", "protein_xref_genecards", "PBX1", "" ], [ "P40425-1", "protein_xref_genecards", "PBX2", "" ], [ "P40426-1", "protein_xref_genecards", "PBX3", "" ], [ "Q8IZK6-1", "protein_xref_genecards", "MCOLN2", "" ], [ "P40429-1", "protein_xref_genecards", "RPL13A", "" ], [ "P51991-1", "protein_xref_genecards", "HNRNPA3", "" ], [ "Q13838-1", "protein_xref_genecards", "DDX39B", "" ], [ "O00337-1", "protein_xref_genecards", "SLC28A1", "" ], [ "Q8TDW7-3", "protein_xref_genecards", "FAT3", "" ], [ "Q5M775-1", "protein_xref_genecards", "SPECC1", "" ], [ "Q8WTV0-1", "protein_xref_genecards", "SCARB1", "" ], [ "Q9H2I8-1", "protein_xref_genecards", "LRMDA", "" ], [ "A0A075B6S2-1", "protein_xref_genecards", "IGKV2D-29", "" ], [ "P08842-1", "protein_xref_genecards", "STS", "" ], [ "P03891-1", "protein_xref_genecards", "MT-ND2", "" ], [ "Q5VUR7-1", "protein_xref_genecards", "ANKRD20A3", "" ], [ "P48960-1", "protein_xref_genecards", "ADGRE5", "" ], [ "P03897-1", "protein_xref_genecards", "MT-ND3", "" ], [ "P02768-1", "protein_xref_genecards", "ALB", "" ], [ "A0A075B7E8-1", "protein_xref_genecards", "IGHV3OR16-13", "" ], [ "P20645-1", "protein_xref_genecards", "M6PR", "" ], [ "P05386-1", "protein_xref_genecards", "RPLP1", "" ], [ "P05387-1", "protein_xref_genecards", "RPLP2", "" ], [ "P24863-1", "protein_xref_genecards", "CCNC", "" ], [ "P08559-1", "protein_xref_genecards", "PDHA1", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref GeneCards\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-03-15T12:10:45.775261\n\nModified on\n - 2020-04-10T11:34:28.717269\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref GeneCards contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to GeneCards database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - GeneCards is a searchable, integrative database that provides comprehensive, user-friendly information on all annotated and predicted human genes. It automatically integrates gene-centric data from ~150 web sources, including genomic, transcriptomic, proteomic, genetic, clinical and functional information.\n\nDescription Domain\n Keywords\n - gene\n - GeneCards\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to GeneCards database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_xref_genecards.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/human_protein_xref_genecards.csv\n Name: human_protein_xref_genecards.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/human_protein_xref_genecards.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20314\"\n Name: \"xref_label\"\n Description: \"Label/Name associated with x-ref\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"20490\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/human_protein_xref_genecards.csv" }