{ "bcoid": "GLY_000031", "title": "Human Protein Alternative Name (UniProtKB)", "description": "The Human Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for human ...", "filename": "human_protein_altnames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Alternative Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF4-1...", "U12 small nu..." ], [ "Q8TBF4-1...", "U12 small nu..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q8TBF4-1", "U12 small nuclear ribonucleoprotein 31 kDa protein", "U12 snRNP 31 kDa protein", "" ], [ "Q8TBF4-1", "U12 small nuclear ribonucleoprotein 31 kDa protein", "U12-31K", "" ], [ "Q9NRJ4-1", "Tubby-like protein 4", "", "" ], [ "Q9NRJ4-1", "Tubby superfamily protein", "", "" ], [ "Q9NQ79-1", "68 kDa chondrocyte-expressed protein", "CEP-68", "" ], [ "Q9NQ79-1", "ASPIC", "", "" ], [ "Q9NRQ5-1", "Protein FN5", "", "" ], [ "Q8IZF5-1", "G-protein coupled receptor 113", "", "" ], [ "Q8IZF5-1", "G-protein coupled receptor PGR23", "", "" ], [ "P30613-1", "R", "", "" ], [ "P30613-1", "Pyruvate kinase 1", "", "" ], [ "P30613-1", "L-type pyruvate kinase", "", "" ], [ "P30613-1", "liver pyruvate kinase", "", "" ], [ "Q5H9L4-1", "testis antigen 40", "CT40", "" ], [ "Q5H9L4-1", "RNA polymerase II TBP-associated factor subunit Q", "", "" ], [ "Q5H9L4-1", "Transcription initiation factor TFIID 50 kDa subunit", "", "" ], [ "Q5H9L4-1", "TATA box-binding protein-associated factor 50 kDa", "", "" ], [ "Q9BZL4-1", "Protein phosphatase 1 myosin-binding subunit of 85 kDa", "Protein phosphatase 1 myosin-binding subunit p85", "" ], [ "Q9NVL1-1", "Protein FAM86C", "", "" ], [ "Q5QJ38-1", "Protein S100-A17", "", "" ], [ "Q5QJ38-1", "Basalin", "", "" ], [ "Q5QJ38-1", "S100 calcium-binding protein A17", "", "" ], [ "Q9NQ75-1", "HEF1-EFS-p130Cas-like protein", "HEPL", "" ], [ "Q9NQ75-1", "HEF-like protein", "", "" ], [ "P20933-1", "N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase", "", "" ], [ "P20933-1", "Aspartylglucosaminidase", "", "" ], [ "P20933-1", "Glycosylasparaginase", "", "" ], [ "P20936-1", "p120GAP", "", "" ], [ "P20936-1", "Ras p21 protein activator", "", "" ], [ "Q8NFX7-1", "Amisyn", "", "" ], [ "Q9UM21-1", "N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVa", "GlcNAc-T IVa", "" ], [ "Q9UM21-1", "N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVa", "GnT-IVa", "" ], [ "Q9UM21-1", "N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVa", "N-acetylglucosaminyltransferase IVa", "" ], [ "Q9UM21-1", "UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVa", "", "" ], [ "P83859-1", "Neuropeptide RF-amide", "", "" ], [ "P83859-1", "Pyroglutamylated arginine-phenylalanine-amide peptide", "", "" ], [ "P83859-1", "P518", "", "" ], [ "Q70EL4-1", "Ubiquitin-specific-processing protease 43", "", "" ], [ "Q70EL4-1", "Deubiquitinating enzyme 43", "", "" ], [ "Q70EL4-1", "Ubiquitin thioesterase 43", "", "" ], [ "Q8TBF2-1", "Protein FAM213B", "", "" ], [ "Q8TBF2-1", "Peroxiredoxin-like 2B", "", "" ], [ "Q15573-1", "RNA polymerase I-specific TBP-associated factor 48 kDa", "TAFI48", "" ], [ "Q15573-1", "TATA box-binding protein-associated factor 1A", "TBP-associated factor 1A", "" ], [ "Q15573-1", "TIF-IB subunit A", "", "" ], [ "Q15573-1", "Transcription factor SL1", "", "" ], [ "Q15572-1", "TATA box-binding protein-associated factor 1C", "TBP-associated factor 1C", "" ], [ "Q15572-1", "RNA polymerase I-specific TBP-associated factor 110 kDa", "TAFI110", "" ], [ "Q15572-1", "TIF-IB subunit C", "", "" ], [ "Q9BQP9-1", "Short palate, lung and nasal epithelium carcinoma-associated protein 3", "", "" ], [ "Q9H999-1", "Pantothenic acid kinase 3", "", "" ], [ "P23919-1", "dTMP kinase", "", "" ], [ "Q8NHX4-1", "Testis spermatocyte apoptosis-related protein 1", "", "" ], [ "Q8NHX4-1", "Testis and spermatogenesis cell-related protein 1", "", "" ], [ "Q8NHX9-1", "Voltage-dependent calcium channel protein TPC2", "", "" ], [ "Q9NXR8-1", "p47ING3", "", "" ], [ "Q9C0H9-5", "SNAP-25-interacting protein", "SNIP", "" ], [ "Q9C0H9-5", "p140Cap", "", "" ], [ "Q9C0H9-5", "p130Cas-associated protein", "", "" ], [ "Q00537-1", "PCTAIRE-motif protein kinase 2", "", "" ], [ "Q00537-1", "Cell division protein kinase 17", "", "" ], [ "Q00537-1", "threonine-protein kinase PCTAIRE-2", "", "" ], [ "Q00536-1", "PCTAIRE-motif protein kinase 1", "", "" ], [ "Q00536-1", "Cell division protein kinase 16", "", "" ], [ "Q00536-1", "threonine-protein kinase PCTAIRE-1", "", "" ], [ "Q00532-1", "Protein kinase p42 KKIALRE", "", "" ], [ "Q00532-1", "threonine-protein kinase KKIALRE", "", "" ], [ "Q96J66-1", "Multidrug resistance-associated protein 8", "", "" ], [ "O00244-1", "Metal transport protein ATX1", "", "" ], [ "Q9UBM8-1", "N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVc", "GlcNAc-T IVc", "" ], [ "Q9UBM8-1", "N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVc", "GnT-IVc", "" ], [ "Q9UBM8-1", "N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVc", "N-acetylglucosaminyltransferase IVc", "" ], [ "Q9UBM8-1", "N-acetylglucosaminyltransferase IV homolog", "hGnT-IV-H", "" ], [ "Q9UBM8-1", "UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVc", "", "" ], [ "Q9H2V7-1", "HSpin1", "", "" ], [ "Q9H2V7-1", "Spinster-like protein 1", "", "" ], [ "O00241-1", "CD172 antigen-like family member B", "", "" ], [ "Q8IX01-1", "serine-rich-splicing factor 14", "", "" ], [ "Q8IX01-1", "serine-rich 14", "", "" ], [ "Q9UBM1-1", "Phospholipid methyltransferase", "PLMT", "" ], [ "Q9UBM1-1", "PEMT2", "", "" ], [ "Q9UBM4-1", "Oculoglycan", "", "" ], [ "P24522-1", "DNA damage-inducible transcript 1 protein", "DDIT-1", "" ], [ "Q13835-1", "Band 6 protein", "B6P", "" ] ] }, "readme": "Name\n - Human Protein Alternative Name (UniProtKB)\n\nVersion\n - 1.7.10\n\nCreated on\n - 2019-01-23T17:21:05.898547\n\nModified on\n - 2020-04-10T11:26:42.330163\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for human [taxid:9606] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_altnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/human_protein_altnames.csv\n Name: human_protein_altnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.7.10/reviewed/human_protein_altnames.stat.csv\n\nFields\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"9139\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"258\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"14450\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"30596\"", "downloadurl": "/ln2data/releases/data/v-1.7.10/reviewed/human_protein_altnames.csv" }