{ "bcoid": "GLY_000497", "title": "N-linked Byonic Glycan [Human]", "description": "The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.).The listed ...", "filename": "glycan_type_n_linked_byonic.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Byonic", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G28681TP...", "HexNAc(2)Hex..." ], [ "G20956ZV...", "HexNAc(2)Hex..." ] ], "headers": [ "glytoucan_ac...", "byonic..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "byonic" } ], [ "G28681TP", "HexNAc(2)Hex(3) % 910.327780" ], [ "G20956ZV", "HexNAc(2)Hex(3)dHex(1) % 1056.385689" ], [ "G92050GC", "HexNAc(2)Hex(4) % 1072.380604" ], [ "G21726WW", "HexNAc(2)Hex(3)dHex(2) % 1202.443598" ], [ "G82364UA", "HexNAc(2)Hex(4)dHex(1) % 1218.438513" ], [ "G02815KT", "HexNAc(2)Hex(5) % 1234.433427" ], [ "G80475RE", "HexNAc(3)Hex(3)dHex(1) % 1259.465062" ], [ "G05428EU", "HexNAc(3)Hex(4) % 1275.459977" ], [ "G35029YA", "HexNAc(4)Hex(3) % 1316.486526" ], [ "G16407EV", "HexNAc(2)Hex(5)dHex(1) % 1380.491336" ], [ "G67486RJ", "HexNAc(4)Hex(3)Sulpho(1) % 1396.443340" ], [ "G41247ZX", "HexNAc(2)Hex(6) % 1396.486251" ], [ "G28997IA", "HexNAc(3)Hex(3)dHex(2) % 1405.522971" ], [ "G10339FR", "HexNAc(3)Hex(4)dHex(1) % 1421.517885" ], [ "G39446WN", "HexNAc(3)Hex(5) % 1437.512800" ], [ "G25987BV", "HexNAc(4)Hex(3)dHex(1) % 1462.544434" ], [ "G55070DG", "HexNAc(4)Hex(4) % 1478.539349" ], [ "G49955PK", "HexNAc(5)Hex(3) % 1519.565898" ], [ "G54168YD", "HexNAc(4)Hex(3)dHex(1)Sulpho(1) % 1542.501249" ], [ "G02860WV", "HexNAc(2)Hex(6)dHex(1) % 1542.544160" ], [ "G92119WG", "HexNAc(4)Hex(4)Sulpho(1) % 1558.496164" ], [ "G31852PQ", "HexNAc(2)Hex(7) % 1558.539074" ], [ "G92597CK", "HexNAc(3)Hex(4)dHex(2) % 1567.575794" ], [ "G15486FH", "HexNAc(3)Hex(5)dHex(1) % 1583.570709" ], [ "G63273GB", "HexNAc(5)Hex(3)Sulpho(1) % 1599.522713" ], [ "G28541PG", "HexNAc(3)Hex(6) % 1599.565624" ], [ "G61855PQ", "HexNAc(4)Hex(3)dHex(2) % 1608.602343" ], [ "G59937CP", "HexNAc(4)Hex(4)dHex(1) % 1624.597258" ], [ "G10486CT", "HexNAc(4)Hex(5) % 1640.592173" ], [ "G88725PI", "HexNAc(5)Hex(3)dHex(1) % 1665.623807" ], [ "G15205QB", "HexNAc(3)Hex(6)Phospho(1) % 1679.531954" ], [ "G65681LR", "HexNAc(5)Hex(4) % 1681.618722" ], [ "G86270PX", "HexNAc(4)Hex(4)dHex(1)Sulpho(1) % 1704.554073" ], [ "G14191MJ", "HexNAc(2)Hex(7)dHex(1) % 1704.596983" ], [ "G72791KH", "HexNAc(3)Hex(4)dHex(1)NeuAc(1) % 1712.613302" ], [ "G03930BU", "HexNAc(3)Hex(4)dHex(3) % 1713.633703" ], [ "G62765YT", "HexNAc(2)Hex(8) % 1720.591898" ], [ "G37399XV", "HexNAc(3)Hex(5)NeuAc(1) % 1728.608217" ], [ "G27622TD", "HexNAc(3)Hex(5)dHex(2) % 1729.628618" ], [ "G69121UK", "HexNAc(5)Hex(3)dHex(1)Sulpho(1) % 1745.580622" ], [ "G03574QJ", "HexNAc(3)Hex(6)dHex(1) % 1745.623532" ], [ "G36923NX", "HexNAc(4)Hex(3)dHex(1)NeuAc(1) % 1753.639851" ], [ "G39411LN", "HexNAc(5)Hex(4)Sulpho(1) % 1761.575536" ], [ "G13144LI", "HexNAc(3)Hex(7) % 1761.618447" ], [ "G45504EY", "HexNAc(4)Hex(4)NeuAc(1) % 1769.634766" ], [ "G50073PQ", "HexNAc(4)Hex(4)dHex(2) % 1770.655167" ], [ "G83555HU", "HexNAc(4)Hex(5)dHex(1) % 1786.650081" ], [ "G89430VM", "HexNAc(6)Hex(3)Sulpho(1) % 1802.602085" ], [ "G02886BB", "HexNAc(4)Hex(6) % 1802.644996" ], [ "G68318VE", "HexNAc(5)Hex(4)dHex(1) % 1827.676631" ], [ "G63236GA", "HexNAc(4)Hex(5)dHex(1)Sulpho(1) % 1866.606896" ], [ "G55382TU", "HexNAc(6)Hex(3)dHex(1) % 1868.703180" ], [ "G67324HN", "HexNAc(3)Hex(5)dHex(1)NeuAc(1) % 1874.666126" ], [ "G06231AO", "HexNAc(3)Hex(5)dHex(3) % 1875.686527" ], [ "G42817NX", "HexNAc(6)Hex(3)Sulpho(2) % 1882.558900" ], [ "G80920RR", "HexNAc(2)Hex(9) % 1882.644721" ], [ "G25079LO", "HexNAc(6)Hex(4) % 1884.698094" ], [ "G01650EU", "HexNAc(3)Hex(6)NeuAc(1) % 1890.661040" ], [ "G50372IH", "HexNAc(3)Hex(6)dHex(2) % 1891.681441" ], [ "G46503DX", "HexNAc(4)Hex(3)NeuAc(2) % 1898.677359" ], [ "G73943YH", "HexNAc(5)Hex(4)dHex(1)Sulpho(1) % 1907.633445" ], [ "G40959OV", "HexNAc(3)Hex(7)dHex(1) % 1907.676356" ], [ "G54600FO", "HexNAc(4)Hex(4)dHex(1)NeuAc(1) % 1915.692675" ], [ "G73430PD", "HexNAc(7)Hex(3) % 1925.724643" ], [ "G59626AS", "HexNAc(4)Hex(5)NeuAc(1) % 1931.687589" ], [ "G60923RB", "HexNAc(4)Hex(5)dHex(2) % 1932.707990" ], [ "G53874PO", "HexNAc(4)Hex(5)dHex(1)Sulpho(2) % 1946.563711" ], [ "G11145KS", "HexNAc(6)Hex(3)dHex(1)Sulpho(1) % 1948.659994" ], [ "G09197ZW", "HexNAc(4)Hex(6)dHex(1) % 1948.702905" ], [ "G62792OG", "HexNAc(5)Hex(3)dHex(1)NeuAc(1) % 1956.719224" ], [ "G19379ID", "HexNAc(5)Hex(4)dHex(2) % 1973.734539" ], [ "G62273EM", "HexNAc(5)Hex(4)dHex(1)Sulpho(2) % 1987.590260" ], [ "G85740DB", "HexNAc(5)Hex(5)dHex(1) % 1989.729454" ], [ "G63276XU", "HexNAc(6)Hex(3)NeuAc(1) % 2013.740687" ], [ "G59540CB", "HexNAc(6)Hex(3)dHex(2) % 2014.761089" ], [ "G11157ZG", "HexNAc(3)Hex(5)NeuAc(2) % 2019.703633" ], [ "G35235RT", "HexNAc(3)Hex(5)dHex(2)NeuAc(1) % 2020.724034" ], [ "G71640LP", "HexNAc(6)Hex(3)dHex(1)Sulpho(2) % 2028.616809" ], [ "G56610MH", "HexNAc(6)Hex(4)dHex(1) % 2030.756003" ], [ "G09528DL", "HexNAc(3)Hex(6)dHex(1)NeuAc(1) % 2036.718949" ], [ "G24255JV", "HexNAc(3)Hex(6)dHex(3) % 2037.739350" ], [ "G83460ZZ", "HexNAc(2)Hex(10) % 2044.697545" ], [ "G43769HG", "HexNAc(6)Hex(5) % 2046.750918" ], [ "G85582CB", "HexNAc(4)Hex(4)NeuAc(2) % 2060.730182" ] ] }, "readme": "Name\n - N-linked Byonic Glycan [Human]\n\nVersion\n - 1.5.36\n\nCreated on\n - 2020-05-12T18:50:02.969226\n\nModified on\n - 2020-05-27T09:56:36.844075\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the byonic format of n-linked human glycans (identified by GlyTouCan Ac.).The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Byonic\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: type_n_linked_byonic.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/type_n_linked_byonic.tsv\n Output Subdomain\n Name: glycan_type_n_linked_byonic.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_type_n_linked_byonic.csv\n Name: glycan_type_n_linked_byonic.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_type_n_linked_byonic.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"201\"\n Name: \"byonic\"\n Description: \"\"\n Unique Values: \"201\"", "downloadurl": "/ln2data/releases/data/v-1.5.36/reviewed/glycan_type_n_linked_byonic.csv" }