{ "bcoid": "GLY_000406", "title": "Mouse NCBI Protein Linkouts", "description": "The Mouse NCBI Protein Linkouts contains mouse [taxid:10090] NCBI RefSeq accessions with their corresponding ...", "filename": "mouse_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "NCBI Linkouts", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "NP_598608.2", "https://glygen.org/protein/Q8BH24", "", "", "", "" ], [ "10227", "Protein", "NP_766282.1", "https://glygen.org/protein/Q8BH27", "", "", "", "" ], [ "10227", "Protein", "NP_001311444.1", "https://glygen.org/protein/Q8BH26", "", "", "", "" ], [ "10227", "Protein", "NP_666640.1", "https://glygen.org/protein/Q8VF69", "", "", "", "" ], [ "10227", "Protein", "NP_666530.1", "https://glygen.org/protein/Q8VF63", "", "", "", "" ], [ "10227", "Protein", "NP_666529.1", "https://glygen.org/protein/Q8VF62", "", "", "", "" ], [ "10227", "Protein", "NP_666637.1", "https://glygen.org/protein/Q8VF66", "", "", "", "" ], [ "10227", "Protein", "NP_666636.1", "https://glygen.org/protein/Q8VF65", "", "", "", "" ], [ "10227", "Protein", "NP_666531.1", "https://glygen.org/protein/Q8VF64", "", "", "", "" ], [ "10227", "Protein", "NP_001074728.1", "https://glygen.org/protein/B2RXV4", "", "", "", "" ], [ "10227", "Protein", "NP_001074832.2", "https://glygen.org/protein/E9Q3P4", "", "", "", "" ], [ "10227", "Protein", "NP_082992.1", "https://glygen.org/protein/Q9CXG9", "", "", "", "" ], [ "10227", "Protein", "NP_112441.2", "https://glygen.org/protein/Q07968", "", "", "", "" ], [ "10227", "Protein", "NP_081894.1", "https://glygen.org/protein/A5H0M4", "", "", "", "" ], [ "10227", "Protein", "NP_080417.2", "https://glygen.org/protein/Q9CXG3", "", "", "", "" ], [ "10227", "Protein", "NP_081083.2", "https://glygen.org/protein/B1AQ85", "", "", "", "" ], [ "10227", "Protein", "NP_904335.1", "https://glygen.org/protein/P03899", "", "", "", "" ], [ "10227", "Protein", "NP_061212.3", "https://glygen.org/protein/O35153", "", "", "", "" ], [ "10227", "Protein", "NP_904329.1", "https://glygen.org/protein/P03893", "", "", "", "" ], [ "10227", "Protein", "NP_062291.1", "https://glygen.org/protein/Q9QYH9", "", "", "", "" ], [ "10227", "Protein", "NP_001297559.1", "https://glygen.org/protein/P52479", "", "", "", "" ], [ "10227", "Protein", "NP_001128599.1", "https://glygen.org/protein/P02762", "", "", "", "" ], [ "10227", "Protein", "NP_062765.1", "https://glygen.org/protein/Q9QYH6", "", "", "", "" ], [ "10227", "Protein", "NP_666672.2", "https://glygen.org/protein/Q3SXJ3", "", "", "", "" ], [ "10227", "Protein", "NP_034287.3", "https://glygen.org/protein/O08537", "", "", "", "" ], [ "10227", "Protein", "NP_001156945.1", "https://glygen.org/protein/Q08AU9", "", "", "", "" ], [ "10227", "Protein", "NP_001191749.1", "https://glygen.org/protein/Q08AU7", "", "", "", "" ], [ "10227", "Protein", "NP_001298023.1", "https://glygen.org/protein/Q5EBH1", "", "", "", "" ], [ "10227", "Protein", "NP_035185.2", "https://glygen.org/protein/Q61409", "", "", "", "" ], [ "10227", "Protein", "NP_667184.2", "https://glygen.org/protein/A2AVK5", "", "", "", "" ], [ "10227", "Protein", "NP_899004.1", "https://glygen.org/protein/Q80YU0", "", "", "", "" ], [ "10227", "Protein", "NP_031701.3", "https://glygen.org/protein/Q61400", "", "", "", "" ], [ "10227", "Protein", "NP_056595.1", "https://glygen.org/protein/Q61406", "", "", "", "" ], [ "10227", "Protein", "NP_001038995.1", "https://glygen.org/protein/Q5SRT8", "", "", "", "" ], [ "10227", "Protein", "NP_035536.2", "https://glygen.org/protein/P70414", "", "", "", "" ], [ "10227", "Protein", "NP_056551.2", "https://glygen.org/protein/P70419", "", "", "", "" ], [ "10227", "Protein", "NP_068361.1", "https://glygen.org/protein/Q9EP78", "", "", "", "" ], [ "10227", "Protein", "NP_444452.1", "https://glygen.org/protein/Q9EP79", "", "", "", "" ], [ "10227", "Protein", "NP_081660.1", "https://glygen.org/protein/Q3URK3", "", "", "", "" ], [ "10227", "Protein", "NP_598510.1", "https://glygen.org/protein/Q9EP72", "", "", "", "" ], [ "10227", "Protein", "NP_068693.1", "https://glygen.org/protein/Q9EP73", "", "", "", "" ], [ "10227", "Protein", "NP_001159880.1", "https://glygen.org/protein/Q9EP71", "", "", "", "" ], [ "10227", "Protein", "NP_001191262.1", "https://glygen.org/protein/Q9EP75", "", "", "", "" ], [ "10227", "Protein", "NP_001028357.1", "https://glygen.org/protein/Q3URK1", "", "", "", "" ], [ "10227", "Protein", "NP_001230191.1", "https://glygen.org/protein/S4R213", "", "", "", "" ], [ "10227", "Protein", "NP_001317978.1", "https://glygen.org/protein/P53702", "", "", "", "" ], [ "10227", "Protein", "NP_081552.2", "https://glygen.org/protein/Q8R349", "", "", "", "" ], [ "10227", "Protein", "NP_082588.2", "https://glygen.org/protein/Q8R344", "", "", "", "" ], [ "10227", "Protein", "NP_038899.1", "https://glygen.org/protein/O08911", "", "", "", "" ], [ "10227", "Protein", "NP_776126.1", "https://glygen.org/protein/Q80WC9", "", "", "", "" ], [ "10227", "Protein", "NP_001153876.1", "https://glygen.org/protein/O08912", "", "", "", "" ], [ "10227", "Protein", "NP_001263213.1", "https://glygen.org/protein/O08915", "", "", "", "" ], [ "10227", "Protein", "NP_034303.3", "https://glygen.org/protein/O08914", "", "", "", "" ], [ "10227", "Protein", "NP_032053.1", "https://glygen.org/protein/O08917", "", "", "", "" ], [ "10227", "Protein", "NP_001116202.2", "https://glygen.org/protein/Q80WC3", "", "", "", "" ], [ "10227", "Protein", "NP_031661.3", "https://glygen.org/protein/O08918", "", "", "", "" ], [ "10227", "Protein", "NP_796159.3", "https://glygen.org/protein/Q80WC1", "", "", "", "" ], [ "10227", "Protein", "NP_835456.1", "https://glygen.org/protein/Q80WC7", "", "", "", "" ], [ "10227", "Protein", "NP_001039019.1", "https://glygen.org/protein/Q9JHY4", "", "", "", "" ], [ "10227", "Protein", "NP_001020738.1", "https://glygen.org/protein/Q91ZK4", "", "", "", "" ], [ "10227", "Protein", "NP_694794.1", "https://glygen.org/protein/Q91ZK0", "", "", "", "" ], [ "10227", "Protein", "NP_083505.1", "https://glygen.org/protein/Q9D4U4", "", "", "", "" ], [ "10227", "Protein", "XP_006540519.1", "https://glygen.org/protein/A0A3Q4EGJ1", "", "", "", "" ], [ "10227", "Protein", "NP_001298065.1", "https://glygen.org/protein/Q8BZM0", "", "", "", "" ], [ "10227", "Protein", "NP_001155210.1", "https://glygen.org/protein/Q8BZM1", "", "", "", "" ], [ "10227", "Protein", "NP_067475.2", "https://glygen.org/protein/Q4VC33", "", "", "", "" ], [ "10227", "Protein", "NP_079852.1", "https://glygen.org/protein/Q66GT5", "", "", "", "" ], [ "10227", "Protein", "NP_033842.3", "https://glygen.org/protein/P50429", "", "", "", "" ], [ "10227", "Protein", "NP_950181.2", "https://glygen.org/protein/Q8BTJ4", "", "", "", "" ], [ "10227", "Protein", "NP_077784.2", "https://glygen.org/protein/Q99LV7", "", "", "", "" ], [ "10227", "Protein", "NP_081393.2", "https://glygen.org/protein/Q4G5Y1", "", "", "", "" ], [ "10227", "Protein", "NP_033319.1", "https://glygen.org/protein/P50427", "", "", "", "" ], [ "10227", "Protein", "NP_079599.1", "https://glygen.org/protein/P59708", "", "", "", "" ], [ "10227", "Protein", "NP_001028494.1", "https://glygen.org/protein/F8VQK3", "", "", "", "" ], [ "10227", "Protein", "NP_031757.1", "https://glygen.org/protein/Q9R1N9", "", "", "", "" ], [ "10227", "Protein", "NP_666977.2", "https://glygen.org/protein/A2AT96", "", "", "", "" ], [ "10227", "Protein", "NP_001156410.1", "https://glygen.org/protein/Q3V3Q4", "", "", "", "" ], [ "10227", "Protein", "NP_001013408.1", "https://glygen.org/protein/Q7M729", "", "", "", "" ], [ "10227", "Protein", "NP_001278374.1", "https://glygen.org/protein/Q3V3Q7", "", "", "", "" ], [ "10227", "Protein", "NP_996899.1", "https://glygen.org/protein/Q7M724", "", "", "", "" ], [ "10227", "Protein", "NP_954605.1", "https://glygen.org/protein/Q7M725", "", "", "", "" ], [ "10227", "Protein", "NP_996907.1", "https://glygen.org/protein/Q7M720", "", "", "", "" ], [ "10227", "Protein", "NP_996906.1", "https://glygen.org/protein/Q7M721", "", "", "", "" ], [ "10227", "Protein", "NP_996902.1", "https://glygen.org/protein/Q7M722", "", "", "", "" ] ] }, "readme": "Name\n - Mouse NCBI Protein Linkouts\n\nVersion\n - 1.5.36\n\nCreated on\n - 2020-03-20T15:55:38.335185\n\nModified on\n - 2020-04-07T10:35:18.106559\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse NCBI Protein Linkouts contains mouse [taxid:10090] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: mouse_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_refseq.csv\n Output Subdomain\n Name: mouse_protein_ncbi_linkouts.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_ncbi_linkouts.csv\n Name: mouse_protein_ncbi_linkouts.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"19583\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"19583\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.5.36/reviewed/mouse_protein_ncbi_linkouts.csv" }