{ "bcoid": "GLY_000392", "title": "Human Protein Names (NCBI RefSeq)", "description": "The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and ...", "filename": "human_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "NP_001159776..." ], [ "Q8TBF5-1...", "NP_001159776..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "Q8TBF5-1", "NP_001159776.1", "phosphatidylinositol-glycan biosynthesis class X protein isoform 1 precursor" ], [ "Q8TBF5-1", "NP_001159776.1", "GPI-mannosyltransferase subunit; phosphatidylinositol-glycan biosynthesis class X protein" ], [ "Q8TBF4-1", "NP_149105.3", "zinc finger CCHC-type and RNA-binding motif-containing protein 1" ], [ "Q8TBF4-1", "NP_149105.3", "U11/U12 snRNP 31K; zinc finger CCHC-type and RNA binding motif 1; U11/U12-31K; U11/U12 snRNP 31 kDa protein; U11/U12 small nuclear ribonucleoprotein 31 kDa protein" ], [ "Q9NRJ4-1", "NP_001007467.1", "tubby-related protein 4 isoform 2" ], [ "Q9NRJ4-1", "NP_001007467.1", "tubby super-family protein; tubby-related protein 4; tubby superfamily protein; tubby like protein 4" ], [ "Q9NQ79-1", "NP_001193457.1", "cartilage acidic protein 1 isoform B precursor" ], [ "Q9NQ79-1", "NP_001193457.1", "chondrocyte expressed protein 68 kDa CEP-68; acidic secreted protein in cartilage" ], [ "Q9NVL8-1", "NP_001269985.1", "uncharacterized protein CCDC198 isoform 1" ], [ "Q9NVL8-1", "NP_001269985.1", "uncharacterized protein C14orf105" ], [ "Q9NRQ5-1", "NP_064564.1", "single-pass membrane and coiled-coil domain-containing protein 4" ], [ "Q9NRQ5-1", "NP_064564.1", "UPF0443 protein C11orf75" ], [ "Q8IZF5-1", "NP_001138640.1", "adhesion G-protein coupled receptor F3 isoform 1 precursor" ], [ "Q8IZF5-1", "NP_001138640.1", "probable G-protein coupled receptor 113; G protein-coupled receptor PGR23; seven transmembrane helix receptor; G protein-coupled receptor 113" ], [ "P30613-1", "NP_000289.1", "pyruvate kinase PKLR isoform 1" ], [ "P30613-1", "NP_000289.1", "pyruvate kinase type L; pyruvate kinase, liver and blood cell; pyruvate kinase 1; pyruvate kinase isozyme R/L; R-type/L-type pyruvate kinase; red cell/liver pyruvate kinase; pyruvate kinase isozymes R/L; pyruvate kinase isozymes L/R; pyruvate kinase PKLR; pyruvate kinase, liver and RBC" ], [ "Q5H9L4-1", "NP_001161946.1", "transcription initiation factor TFIID subunit 7-like isoform 2" ], [ "Q5H9L4-1", "NP_001161946.1", "cancer/testis antigen 40; TBP-associated factor, RNA polymerase II, Q; RNA polymerase II TBP-associated factor subunit Q; TATA box-binding protein-associated factor 50 kDa; TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa; transcription initiation factor TFIID 50 kDa subunit" ], [ "Q9BZL4-1", "NP_001258547.1", "protein phosphatase 1 regulatory subunit 12C isoform b" ], [ "Q9BZL4-1", "NP_001258547.1", "leukocyte receptor cluster (LRC) encoded novel gene 3; leukocyte receptor cluster (LRC) member 3; myosin-binding subunit 85; protein phosphatase 1 myosin-binding subunit p85; protein phosphatase 1 myosin-binding subunit of 85 kDa; protein phosphatase 1, regulatory (inhibitor) subunit 12C" ], [ "Q9NVL1-1", "NP_001093123.1", "protein FAM86C1 isoform 3" ], [ "Q9NVL1-1", "NP_001093123.1", "family with sequence similarity 86, member C; protein FAM86C1" ], [ "Q5QJ38-1", "NP_001008536.1", "trichohyalin-like protein 1" ], [ "Q5QJ38-1", "NP_001008536.1", "intermediate filament-associated protein; S100 calcium-binding protein A17; basalin" ], [ "Q9NQ75-1", "NP_001157586.1", "cas scaffolding protein family member 4 isoform b" ], [ "Q9NQ75-1", "NP_001157586.1", "HEF-like protein; HEF1-EFS-p130Cas-like protein; Cas scaffolding protein family member 4" ], [ "P20930-1", "NP_002007.1", "filaggrin" ], [ "P20930-1", "NP_002007.1", "epidermal filaggrin" ], [ "P20933-1", "NP_000018.2", "N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase isoform 1 preproprotein" ], [ "P20933-1", "NP_000018.2", "N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; glycosylasparaginase; N4-(N-acetyl-beta-glucosaminyl)-L-asparagine amidase; aspartylglucosylamine deaspartylase" ], [ "P20936-1", "NP_002881.1", "ras GTPase-activating protein 1 isoform 1" ], [ "P20936-1", "NP_002881.1", "triphosphatase-activating protein; RAS p21 protein activator (GTPase activating protein) 1; p120 RAS GTPase activating protein" ], [ "Q8NFX7-1", "NP_001291405.1", "syntaxin-binding protein 6 isoform 1" ], [ "Q9UM21-1", "NP_001153626.1", "alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform 2" ], [ "Q9UM21-1", "NP_001153626.1", "UDP-N-acetylglucosamine:alpha1,3-d-mannoside beta1,4-N-acetylglucosaminyltransferase; alpha-1,3-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase; mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme A; mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A; UDP-GlcNAc:a-1,3-D-mannoside b-1,4-acetylglucosaminyltransferase IV; N-acetylglucosaminyltransferase IVa; N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IVa; UDP-N-acetylglucosamine: alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IVa; glcNAc-T IVa" ], [ "Q496A3-1", "NP_659463.1", "spermatogenesis-associated serine-rich protein 1" ], [ "P83859-1", "NP_937823.1", "orexigenic neuropeptide QRFP preproprotein" ], [ "P83859-1", "NP_937823.1", "P518 precursor protein; orexigenic neuropeptide QRFP; RF(Arg-Phe)amide family 26 amino acid peptide (P518); prepro-QRFP" ], [ "P40617-1", "NP_001032241.1", "ADP-ribosylation factor-like protein 4A" ], [ "P40617-1", "NP_001032241.1", "ADP-ribosylation factor-like 4; ADP-ribosylation factor-like 4A" ], [ "Q70EL4-1", "NP_001254505.1", "ubiquitin carboxyl-terminal hydrolase 43 isoform 2" ], [ "Q70EL4-1", "NP_001254505.1", "ubiquitin specific protease 43; ubiquitin carboxyl-terminal hydrolase 43; ubiquitin thioesterase 43; deubiquitinating enzyme 43; ubiquitin-specific-processing protease 43; ubiquitin thiolesterase 43" ], [ "Q8TBF2-1", "NP_001182665.1", "prostamide/prostaglandin F synthase isoform a" ], [ "Q8TBF2-1", "NP_001182665.1", "prostamide/prostaglandin F synthase; prostamide/PGF synthase; prostamide/PG F synthase; thioredoxin-type PGF synthase; family with sequence similarity 213 member B" ], [ "Q15573-1", "NP_001188465.1", "TATA box-binding protein-associated factor RNA polymerase I subunit A isoform 1" ], [ "Q15573-1", "NP_001188465.1", "SL1, 48kD subunit; TBP-associated factor 1A; transcription factor SL1; TATA box-binding protein-associated factor 1A; transcription initiation factor SL1/TIF-IB subunit A; RNA polymerase I-specific TBP-associated factor 48 kDa; TATA-box binding protein associated factor, RNA polymerase I, A; TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kD; TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa" ], [ "Q15572-1", "NP_001230085.1", "TATA box-binding protein-associated factor RNA polymerase I subunit C isoform 3" ], [ "Q15572-1", "NP_001230085.1", "transcription factor SL1; SL1, 110kD subunit; TBP-associated factor 1C; TATA-box binding protein associated factor, RNA polymerase I, C; TATA box-binding protein-associated factor 1C; transcription initiation factor SL1/TIF-IB subunit C; RNA polymerase I-specific TBP-associated factor 110 kDa; TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kD; TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" ], [ "Q9BQP9-1", "NP_001035904.1", "BPI fold-containing family A member 3 isoform 2 precursor" ], [ "Q9BQP9-1", "NP_001035904.1", "short long palate, lung and nasal epithelium carcinoma associated 3" ], [ "Q9H999-1", "NP_078870.1", "pantothenate kinase 3" ], [ "Q9H999-1", "NP_078870.1", "hPanK3; pantothenic acid kinase 3" ], [ "P23919-1", "NP_001158503.1", "thymidylate kinase isoform 2" ], [ "P23919-1", "NP_001158503.1", "dTMP kinase; deoxythymidylate kinase (thymidylate kinase)" ], [ "Q8NHX4-1", "NP_620712.2", "spermatogenesis-associated protein 3" ], [ "Q8NHX4-1", "NP_620712.2", "testis and spermatogenesis cell apoptosis related gene 1; testis spermatocyte apoptosis-related protein 1; testis and spermatogenesis cell-related protein 1" ], [ "Q8NHX9-1", "NP_620714.2", "two pore calcium channel protein 2" ], [ "Q8NHX9-1", "NP_620714.2", "voltage-dependent calcium channel protein TPC2" ], [ "A8MU46-1", "NP_001099035.2", "smoothelin-like protein 1" ], [ "A8MU46-1", "NP_001099035.2", "calponin homology-associated smooth muscle protein" ], [ "Q6ZNW5-1", "NP_001013679.2", "GDP-D-glucose phosphorylase 1" ], [ "Q6ZNW5-1", "NP_001013679.2", "GDP-D-glucose phosphorylase C15orf58" ], [ "Q9NXR8-1", "NP_061944.2", "inhibitor of growth protein 3 isoform 1" ], [ "Q9NXR8-1", "NP_061944.2", "inhibitor of growth protein 3" ], [ "Q9C0H2-1", "NP_079526.1", "protein tweety homolog 3" ], [ "Q9C0H2-1", "NP_079526.1", "hTTY3; tweety homolog 3" ], [ "Q9C0H5-1", "NP_001295136.1", "rho GTPase-activating protein 39 isoform 1" ], [ "Q9C0H5-1", "NP_001295136.1", "crossGAP homolog; RhoGAP93B homolog" ], [ "Q9C0H6-1", "NP_061990.2", "kelch-like protein 4 isoform 1" ], [ "Q9C0H6-1", "NP_061990.2", "kelch-like protein 4" ], [ "Q9C0H9-5", "NP_079524.2", "SRC kinase signaling inhibitor 1" ], [ "Q9C0H9-5", "NP_079524.2", "SNAP-25-interacting protein; SNAP25-interacting protein; p140Cap; P130Cas-associated protein" ], [ "Q9NXR1-2", "NP_001137451.1", "nuclear distribution protein nudE homolog 1" ], [ "Q9NXR1-2", "NP_001137451.1", "LIS1-interacting protein NUDE1, rat homolog; nudE nuclear distribution gene E homolog 1; nudE nuclear distribution E homolog 1; epididymis secretory sperm binding protein" ], [ "Q00537-1", "NP_001163935.1", "cyclin-dependent kinase 17 isoform 2" ], [ "Q00537-1", "NP_001163935.1", "serine/threonine-protein kinase PCTAIRE-2; protein kinase cdc2-related PCTAIRE-2; cell division protein kinase 17; PCTAIRE-motif protein kinase 2" ], [ "Q00536-1", "NP_001163931.1", "cyclin-dependent kinase 16 isoform 3" ], [ "Q00536-1", "NP_001163931.1", "PCTAIRE-motif protein kinase 1; cell division protein kinase 16; serine/threonine-protein kinase PCTAIRE-1; testis secretory sperm-binding protein Li 224n" ], [ "Q9NXR5-1", "NP_001273650.1", "ankyrin repeat domain-containing protein 10 isoform 2" ], [ "Q9NXR5-1", "NP_001273650.1", "ankyrin repeat domain-containing protein 10" ], [ "Q00532-1", "NP_004187.2", "cyclin-dependent kinase-like 1 isoform 1" ], [ "Q00532-1", "NP_004187.2", "serine/threonine protein kinase KKIALRE; protein kinase p42 KKIALRE; cyclin-dependent kinase-like 1 (CDC2-related kinase)" ], [ "Q96J66-1", "NP_115972.2", "ATP-binding cassette sub-family C member 11 isoform a" ], [ "Q96J66-1", "NP_115972.2", "multi-resistance protein 8; ATP-binding cassette transporter MRP8; ATP-binding cassette protein C11; ATP-binding cassette transporter sub-family C member 11; ATP-binding cassette sub-family C member 11; multidrug resistance-associated protein 8; ATP-binding cassette, sub-family C (CFTR/MRP), member 11" ] ] }, "readme": "Name\n - Human Protein Names (NCBI RefSeq)\n\nVersion\n - 1.5.36\n\nCreated on\n - 2020-03-15T13:26:46.282740\n\nModified on\n - 2020-04-10T11:49:01.913927\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Names (NCBI RefSeq) dataset contains human [taxid:9606] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_9606.gpff\n URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_9606.gpff\n Name: human_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_proteinnames_refseq.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_proteinnames_refseq.csv\n Name: human_protein_proteinnames_refseq.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"18825\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"18766\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"35827\"", "downloadurl": "/ln2data/releases/data/v-1.5.36/reviewed/human_protein_proteinnames_refseq.csv" }