{
    "bcoid": "GLY_000380",
    "title": "HCV1a UniProtKB Xref Hepatitis C Online",
    "description": "The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref Pfam contains hcv1a [taxid:11108] UniProtKB ...",
    "filename": "hcv1a_protein_xref_hepatitisconline.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1a, isolate H)",
        "molecule": "Protein",
        "tags": "Hepatitis C Online cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0C045-1...",
                "protein_xref..."
            ],
            [
                "P27958-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P0C045-1",
                "protein_xref_hepatitisconline",
                "hcv",
                ""
            ],
            [
                "P27958-1",
                "protein_xref_hepatitisconline",
                "hcv",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1a UniProtKB Xref Hepatitis C Online\n\nVersion\n   - 1.5.36\n\nCreated on\n  - 2020-03-15T12:06:19.473408\n\nModified on\n   - 2020-04-09T17:53:06.626473\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref Pfam contains hcv1a [taxid:11108] UniProtKB canonical accessions cross-referenced to Hepatitis C Online database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models.\n\nDescription Domain\n   Keywords\n   - Hepatitis C Online\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Hepatitis C Online database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1a.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-hepatitis-c-virus-1a.nt\n   Output Subdomain\n      Name: hcv1a_protein_xref_hepatitisconline.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_hepatitisconline.csv\n      Name: hcv1a_protein_xref_hepatitisconline.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_hepatitisconline.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"2\"\n      Name: \"xref_label\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.36/reviewed/hcv1a_protein_xref_hepatitisconline.csv"
}