{ "bcoid": "GLY_000275", "title": "Rat Protein Information (NCBI RefSeq)", "description": "The Rat Protein Information (NCBI RefSeq) dataset contains rat [taxid:10116] protein information such ...", "filename": "rat_protein_info_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZUH1-1...", "NP_001099690..." ], [ "D4A1B7-1...", "NP_001099375..." ] ], "headers": [ "uniprotkb_ca...", "p_refseq_ac_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "p_refseq_ac_best_match" }, { "type": "string", "label": "refseq_protein_name" }, { "type": "string", "label": "refseq_protein_length" }, { "type": "string", "label": "refseq_protein_summary" } ], [ "D3ZUH1-1", "NP_001099690.1", "NACHT, LRR and PYD domains-containing protein 4A", "982", "" ], [ "D4A1B7-1", "NP_001099375.1", "developmental pluripotency associated 1 precursor", "118", "" ], [ "D3ZF53-1", "NP_001103103.1", "uncharacterized protein LOC691277 precursor", "235", "" ], [ "D4AAX2-1", "NP_001101740.1", "uncharacterized protein C5orf47 homolog", "165", "" ], [ "Q1AHR4-1", "NP_001129373.1", "uncharacterized protein C20orf144 homolog", "197", "" ], [ "D3ZY74-1", "NP_001102721.1", "FANCD2 opposite strand protein", "178", "" ], [ "D4ACA1-1", "NP_001102905.1", "NXPE family member 3", "559", "" ], [ "A0A0G2JVL5-1", "NP_001128020.1", "UPF0600 protein C5orf51 homolog", "251", "" ], [ "Q6MGD2-1", "NP_998729.1", "zinc finger and BTB domain-containing protein 9", "465", "putative transcription initiation factor; contains zinc finger and BTB domains for binding to DNA and other proteins [RGD, Feb 2006]. " ], [ "M0R9J6-1", "NP_001127972.1", "UPF0538 protein C2orf76 homolog", "126", "" ], [ "F1LST7-1", "NP_001163899.1", "coiled-coil domain-containing protein 185", "621", "" ], [ "A0A0G2K9F8-1", "NP_001100957.1", "zinc finger protein 112", "893", "" ], [ "M0RB04-1", "NP_001014072.2", "protein FAM110A isoform 2", "326", "" ], [ "B0BN67-1", "NP_001102620.1", "protein FAM181B", "419", "" ], [ "D4A5F3-1", "NP_001103043.1", "uncharacterized protein C2orf50 homolog", "148", "" ], [ "D3ZSF0-1", "NP_001128023.1", "protein FAM217B", "445", "" ], [ "D3ZVY5-1", "NP_001099513.1", "leukemia-associated protein 7", "212", "" ], [ "B0BNK2-1", "NP_001102763.1", "uncharacterized protein C11orf71 homolog", "117", "" ], [ "M0RBN5-1", "NP_001000128.1", "olfactory receptor Olr39", "329", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A3K0-1", "NP_001001003.1", "olfactory receptor Olr1615", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K620-1", "NP_001000292.1", "olfactory receptor Olr458", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZV28-1", "NP_001000840.1", "olfactory receptor Olr1616", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A6Y2-1", "NP_001000962.1", "olfactory receptor Olr1260", "310", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A7V3-1", "NP_001000841.1", "olfactory receptor Olr1614", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K6G0-1", "NP_001000732.1", "olfactory receptor Olr271", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZDB8-1", "NP_001000910.1", "olfactory receptor Olr1598", "310", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2JUP1-1", "NP_001000762.1", "olfactory receptor Olr322", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZHS4-1", "NP_001000113.1", "olfactory receptor Olr8", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K8X6-1", "NP_001000031.1", "olfactory receptor Olr1499", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K4M2-1", "NP_001000665.1", "olfactory receptor Olr566", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K2Y6-1", "NP_001000030.1", "olfactory receptor Olr1498", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K3R9-1", "NP_001000257.1", "olfactory receptor Olr357", "315", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2JWT8-1", "NP_001000691.1", "olfactory receptor Olr29", "335", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K9X4-1", "NP_001001353.1", "olfactory receptor Olr1536", "309", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A3G7-1", "NP_001138474.1", "keratin associated protein 7-1", "87", "" ], [ "D3ZVQ4-1", "NP_001000293.1", "olfactory receptor Olr459", "309", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "F7F0Y6-1", "NP_001258281.1", "cytochrome P450, family 4, subfamily f, polypeptide 37", "703", "" ], [ "D3ZLF8-1", "NP_001000839.1", "olfactory receptor Olr1617", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZAM2-1", "NP_001000097.1", "olfactory receptor Olr1620", "324", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZYH6-1", "NP_001000486.1", "olfactory receptor Olr959", "313", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZVV4-1", "NP_001000768.1", "olfactory receptor Olr7", "313", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A2Y4-1", "NP_001000521.1", "olfactory receptor Olr1619", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K3I7-1", "NP_001000310.1", "olfactory receptor Olr495", "315", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "M0R7G6-1", "NP_001000719.1", "olfactory receptor Olr1488", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2JVQ9-1", "NP_001000619.1", "olfactory receptor Olr727", "309", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "F1LZR0-1", "NP_001182541.1", "keratin associated protein", "66", "" ], [ "M0R4S8-1", "NP_001000539.1", "olfactory receptor Olr6", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZJP2-1", "NP_001102522.1", "uncharacterized protein C21orf62 homolog precursor", "211", "" ], [ "D3ZED7-1", "NP_001166899.1", "proline-rich protein 19", "364", "" ], [ "M0RA52-1", "NP_001178597.1", "transmembrane protein 185B", "350", "" ], [ "B5DEL0-1", "NP_001099997.1", "testis specific protein, Y-linked 26", "334", "" ], [ "D4A7K0-1", "NP_001138332.1", "transmembrane protein 242", "140", "" ], [ "M0RE03-1", "NP_001103045.1", "COX11 cytochrome c oxidase copper chaperone", "275", "" ], [ "D3ZZ26-1", "NP_001103034.1", "protein phosphatase 1 regulatory subunit 3D", "279", "" ], [ "D3ZXZ1-1", "NP_001008879.2", "zinc finger protein 292", "2706", "zinc finger protein that interacts with POU domain transcription factor Pit-1 to activate expression from the growth hormone promoter [RGD, Feb 2006]. " ], [ "D4A633-1", "NP_001178541.1", "zinc finger protein 362", "418", "" ], [ "D4AAF1-1", "NP_001128486.1", "ankyrin repeat domain-containing protein 39", "183", "" ], [ "A0A0G2K3I2-1", "NP_001258147.1", "interferon alpha family, gene 2 precursor", "192", "" ], [ "Q6AY07-1", "NP_001013965.1", "fructose-bisphosphate aldolase", "364", "" ], [ "D3ZWC2-1", "NP_001101262.1", "palate lung and nasal carcinoma-like protein precursor", "270", "" ], [ "A0A0G2K0Q4-1", "NP_001100679.1", "THAP domain-containing protein 6", "216", "" ], [ "D4A504-1", "NP_001099806.1", "membrane-spanning 4-domains subfamily A member 10", "232", "" ], [ "M0R4Q5-1", "NP_001012045.2", "kelch repeat and BTB domain-containing protein 6", "489", "" ], [ "D4A972-1", "NP_001100416.1", "melanoma-associated antigen B5", "366", "" ], [ "D3ZKH1-1", "NP_001276749.1", "ovo-like 3", "190", "" ], [ "D4A5J1-1", "NP_001100796.1", "kelch repeat and BTB domain-containing protein 11", "633", "" ], [ "D3ZA00-1", "NP_001178772.1", "V-type proton ATPase subunit S1-like protein precursor", "336", "" ], [ "F1LWK5-1", "NP_001258081.1", "progestin and adipoQ receptor family member 9", "373", "" ], [ "M0R5M5-1", "NP_001101592.1", "jerky protein homolog-like", "524", "" ], [ "Q5R1M6-1", "NP_001009505.1", "follicular dendritic cell secreted peptide precursor", "81", "" ], [ "D3Z930-1", "XP_001053790.1", "methyltransferase-like protein 17, mitochondrial isoform X2", "461", "" ], [ "M0R3X9-1", "XP_006227268.1", "EKC/KEOPS complex subunit LAGE3-like", "198", "" ], [ "A4FTZ7-1", "XP_001065392.1", "uncharacterized protein LOC302192 isoform X4", "202", "" ], [ "A0A0G2K5P4-1", "XP_001065275.1", "40S ribosomal protein S26-like", "115", "" ], [ "D3ZQV8-1", "XP_002727335.1", "PHD finger protein 6 isoform X2", "364", "" ], [ "D3ZNP4-1", "XP_006227068.1", "protein FAM122A isoform X3", "180", "" ], [ "M0R4Y6-1", "XP_006227073.1", "transmembrane gamma-carboxyglutamic acid protein 3", "231", "" ], [ "D3ZM03-1", "XP_001067193.2", "vacuolar ATPase assembly integral membrane protein Vma21 isoform X2", "101", "" ], [ "A0A0G2JUE1-1", "XP_008756377.2", "putative sperm motility kinase W", "481", "" ], [ "M0R5T3-1", "XP_001072386.1", "zinc finger protein 449", "518", "" ], [ "D4A428-1", "XP_001053250.1", "interferon alpha-1-like", "191", "" ], [ "M0RCW7-1", "XP_006227213.1", "paired immunoglobulin-like type 2 receptor beta-2 isoform X2", "211", "" ], [ "D3Z9L5-1", "XP_006223589.1", "WD repeat-containing protein 11 isoform X1", "1224", "" ], [ "F7FD99-1", "XP_006223609.1", "uncharacterized protein C10orf120 homolog", "342", "" ] ] }, "readme": "Name\n - Rat Protein Information (NCBI RefSeq)\n\nVersion\n - 1.5.36\n\nCreated on\n - 2019-09-06T14:06:39.001496\n\nModified on\n - 2020-04-10T12:10:02.728045\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Information (NCBI RefSeq) dataset contains rat [taxid:10116] protein information such as protein accession, name, length and protein function summary from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein information\n - protein length\n - NCBI RefSeq\n - protein summary\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10116.gpff\n URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_10116.gpff\n Output Subdomain\n Name: rat_protein_info_refseq.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_info_refseq.csv\n Name: rat_protein_info_refseq.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_info_refseq.stat.csv\n\nFields\n Name: \"refseq_protein_summary\"\n Description: \"Function of the protein in NCBI RefSeq database\"\n Unique Values: \"4319\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"15707\"\n Name: \"p_refseq_ac_best_match\"\n Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n Unique Values: \"15707\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"15628\"\n Name: \"refseq_protein_length\"\n Description: \"Length of the protein in NCBI RefSeq database\"\n Unique Values: \"1773\"", "downloadurl": "/ln2data/releases/data/v-1.5.36/reviewed/rat_protein_info_refseq.csv" }