{ "bcoid": "GLY_000226", "title": "Rat Glycosylation Sites (RCSB PDB)", "description": "The Rat Glycosylation Sites (RCSB PDB) dataset contains rat [taxid:11106] proteins glycosites mapped ...", "filename": "rat_proteoform_glycosylation_sites_pdb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P18910-1...", "423..." ], [ "P18910-1...", "41..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "pdb_id" }, { "type": "string", "label": "amino_acid_chain" }, { "type": "string", "label": "glycosylation_site_pdb" }, { "type": "string", "label": "carb_name" } ], [ "P18910-1", "423", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1DP4", "protein_xref_pdb4glycosylation", "1DP4", "1DP4", "A", "395", "NAG" ], [ "P18910-1", "41", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1DP4", "protein_xref_pdb4glycosylation", "1DP4", "1DP4", "A", "13", "NAG" ], [ "P18910-1", "423", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1DP4", "protein_xref_pdb4glycosylation", "1DP4", "1DP4", "C", "395", "NAG" ], [ "P18910-1", "41", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1DP4", "protein_xref_pdb4glycosylation", "1DP4", "1DP4", "C", "13", "NAG" ], [ "P18910-1", "208", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1DP4", "protein_xref_pdb4glycosylation", "1DP4", "1DP4", "C", "180", "NAG" ], [ "P13599-1", "126", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1FRT", "protein_xref_pdb4glycosylation", "1FRT", "1FRT", "A", "104", "NAG" ], [ "P13599-1", "247", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1FRT", "protein_xref_pdb4glycosylation", "1FRT", "1FRT", "A", "225", "NAG" ], [ "P13599-1", "126", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1I1A", "protein_xref_pdb4glycosylation", "1I1A", "1I1A", "A", "104", "NDG" ], [ "P13599-1", "150", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1I1A", "protein_xref_pdb4glycosylation", "1I1A", "1I1A", "A", "128", "NDG" ], [ "P13599-1", "247", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1I1A", "protein_xref_pdb4glycosylation", "1I1A", "1I1A", "A", "225", "NAG" ], [ "P13599-1", "109", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1I1A", "protein_xref_pdb4glycosylation", "1I1A", "1I1A", "A", "87", "NDG" ], [ "P80067-1", "29", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1JQP", "protein_xref_pdb4glycosylation", "1JQP", "1JQP", "A", "5", "NAG" ], [ "P80067-1", "275", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1JQP", "protein_xref_pdb4glycosylation", "1JQP", "1JQP", "A", "251", "NAG" ], [ "P06494-1", "68", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1N8Y", "protein_xref_pdb4glycosylation", "1N8Y", "1N8Y", "C", "46", "NAG" ], [ "P06494-1", "188", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1N8Y", "protein_xref_pdb4glycosylation", "1N8Y", "1N8Y", "C", "166", "NAG" ], [ "P06494-1", "260", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1N8Y", "protein_xref_pdb4glycosylation", "1N8Y", "1N8Y", "C", "238", "NAG" ], [ "Q9JJS8-1", "103", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1NT0", "protein_xref_pdb4glycosylation", "1NT0", "1NT0", "A", "84", "NAG" ], [ "Q9JJS8-1", "103", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1NT0", "protein_xref_pdb4glycosylation", "1NT0", "1NT0", "G", "84", "NAG" ], [ "P29288-1", "118", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1QFC", "protein_xref_pdb4glycosylation", "1QFC", "1QFC", "A", "97", "NAG" ], [ "P29288-1", "118", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1QHW", "protein_xref_pdb4glycosylation", "1QHW", "1QHW", "A", "118", "NAG" ], [ "P20646-1", "93", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1RPA", "protein_xref_pdb4glycosylation", "1RPA", "1RPA", "A", "62", "NAG" ], [ "P20646-1", "332", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1RPA", "protein_xref_pdb4glycosylation", "1RPA", "1RPA", "A", "301", "NAG" ], [ "P20646-1", "93", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1RPT", "protein_xref_pdb4glycosylation", "1RPT", "1RPT", "A", "62", "NAG" ], [ "P20646-1", "332", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1RPT", "protein_xref_pdb4glycosylation", "1RPT", "1RPT", "A", "301", "NAG" ], [ "P18910-1", "41", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1T34", "protein_xref_pdb4glycosylation", "1T34", "1T34", "A", "13", "NAG" ], [ "P18910-1", "423", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1T34", "protein_xref_pdb4glycosylation", "1T34", "1T34", "A", "395", "NAG" ], [ "P18910-1", "41", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1T34", "protein_xref_pdb4glycosylation", "1T34", "1T34", "B", "13", "NAG" ], [ "P18910-1", "423", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "1T34", "protein_xref_pdb4glycosylation", "1T34", "1T34", "B", "395", "NAG" ], [ "P97546-2", "170", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "2WV3", "protein_xref_pdb4glycosylation", "2WV3", "2WV3", "A", "26", "NAG" ], [ "P97546-2", "283", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "2WV3", "protein_xref_pdb4glycosylation", "2WV3", "2WV3", "A", "139", "NAG" ], [ "Q64610-1", "524", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "2XRG", "protein_xref_pdb4glycosylation", "2XRG", "2XRG", "A", "524", "NAG" ], [ "P18910-1", "41", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3A3K", "protein_xref_pdb4glycosylation", "3A3K", "3A3K", "A", "13", "NAG" ], [ "P18910-1", "423", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3A3K", "protein_xref_pdb4glycosylation", "3A3K", "3A3K", "A", "395", "NAG" ], [ "P18910-1", "41", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3A3K", "protein_xref_pdb4glycosylation", "3A3K", "3A3K", "B", "13", "NAG" ], [ "P18910-1", "208", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3A3K", "protein_xref_pdb4glycosylation", "3A3K", "3A3K", "B", "180", "NAG" ], [ "P18910-1", "423", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3A3K", "protein_xref_pdb4glycosylation", "3A3K", "3A3K", "B", "395", "NAG" ], [ "P07174-1", "61", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3BUK", "protein_xref_pdb4glycosylation", "3BUK", "3BUK", "C", "32", "NAG" ], [ "P07174-1", "61", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3BUK", "protein_xref_pdb4glycosylation", "3BUK", "3BUK", "D", "32", "NAG" ], [ "P13599-1", "126", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3FRU", "protein_xref_pdb4glycosylation", "3FRU", "3FRU", "A", "104", "NAG" ], [ "P13599-1", "247", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3FRU", "protein_xref_pdb4glycosylation", "3FRU", "3FRU", "C", "225", "NAG" ], [ "P13599-1", "247", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3FRU", "protein_xref_pdb4glycosylation", "3FRU", "3FRU", "A", "225", "NAG" ], [ "P13599-1", "126", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3FRU", "protein_xref_pdb4glycosylation", "3FRU", "3FRU", "C", "104", "NAG" ], [ "P42260-1", "67", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "A", "36", "NAG" ], [ "P42260-1", "73", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "A", "42", "NAG" ], [ "P42260-1", "275", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "A", "244", "NAG" ], [ "P42260-1", "378", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "A", "347", "NAG" ], [ "P42260-1", "412", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "A", "381", "NAG" ], [ "P42260-1", "67", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "B", "36", "NAG" ], [ "P42260-1", "275", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "B", "244", "NAG" ], [ "P42260-1", "378", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6G", "protein_xref_pdb4glycosylation", "3H6G", "3H6G", "B", "347", "NAG" ], [ "P42260-1", "67", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "A", "36", "NAG" ], [ "P42260-1", "275", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "A", "244", "NAG" ], [ "P42260-1", "378", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "A", "347", "NAG" ], [ "P42260-1", "412", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "A", "381", "NAG" ], [ "P42260-1", "67", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "B", "36", "NAG" ], [ "P42260-1", "275", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "B", "244", "NAG" ], [ "P42260-1", "378", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "B", "347", "NAG" ], [ "P42260-1", "412", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3H6H", "protein_xref_pdb4glycosylation", "3H6H", "3H6H", "B", "381", "NAG" ], [ "P19492-1", "260", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "A", "238", "NAG" ], [ "P19492-1", "374", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "A", "352", "NAG" ], [ "P19492-1", "260", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "B", "238", "NAG" ], [ "P19492-1", "57", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "C", "35", "NAG" ], [ "P19492-1", "260", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "C", "238", "NAG" ], [ "P19492-1", "374", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "C", "352", "NAG" ], [ "P19492-1", "57", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "D", "35", "NAG" ], [ "P19492-1", "260", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "D", "238", "NAG" ], [ "P19492-1", "374", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O21", "protein_xref_pdb4glycosylation", "3O21", "3O21", "D", "352", "NAG" ], [ "P19491-1", "256", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O2J", "protein_xref_pdb4glycosylation", "3O2J", "3O2J", "A", "235", "NAG" ], [ "P19491-1", "370", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3O2J", "protein_xref_pdb4glycosylation", "3O2J", "3O2J", "B", "349", "NAG" ], [ "P42264-1", "278", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OLZ", "protein_xref_pdb4glycosylation", "3OLZ", "3OLZ", "B", "247", "NAG" ], [ "P42264-1", "278", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OLZ", "protein_xref_pdb4glycosylation", "3OLZ", "3OLZ", "A", "247", "NAG" ], [ "P42264-1", "70", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OLZ", "protein_xref_pdb4glycosylation", "3OLZ", "3OLZ", "A", "39", "NAG" ], [ "P42264-1", "381", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OLZ", "protein_xref_pdb4glycosylation", "3OLZ", "3OLZ", "A", "350", "NAG" ], [ "P42264-1", "381", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OLZ", "protein_xref_pdb4glycosylation", "3OLZ", "3OLZ", "B", "350", "NAG" ], [ "Q63273-1", "219", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM0", "protein_xref_pdb4glycosylation", "3OM0", "3OM0", "A", "200", "NAG" ], [ "Q63273-1", "271", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM0", "protein_xref_pdb4glycosylation", "3OM0", "3OM0", "A", "252", "NAG" ], [ "Q63273-1", "285", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM0", "protein_xref_pdb4glycosylation", "3OM0", "3OM0", "A", "266", "NAG" ], [ "Q63273-1", "372", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM0", "protein_xref_pdb4glycosylation", "3OM0", "3OM0", "A", "353", "NAG" ], [ "Q63273-1", "322", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM0", "protein_xref_pdb4glycosylation", "3OM0", "3OM0", "A", "303", "NAG" ], [ "Q63273-1", "285", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM1", "protein_xref_pdb4glycosylation", "3OM1", "3OM1", "A", "266", "NAG" ], [ "Q63273-1", "271", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM1", "protein_xref_pdb4glycosylation", "3OM1", "3OM1", "A", "252", "NAG" ], [ "Q63273-1", "271", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM1", "protein_xref_pdb4glycosylation", "3OM1", "3OM1", "B", "252", "NAG" ], [ "Q63273-1", "372", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM1", "protein_xref_pdb4glycosylation", "3OM1", "3OM1", "A", "353", "NAG" ], [ "Q63273-1", "285", "Asn", "", "N-linked", "protein_xref_pdb4glycosylation", "3OM1", "protein_xref_pdb4glycosylation", "3OM1", "3OM1", "B", "266", "NAG" ] ] }, "readme": "Name\n - Rat Glycosylation Sites (RCSB PDB)\n\nVersion\n - 1.5.36\n\nCreated on\n - 2019-09-06T14:06:38.954510\n\nModified on\n - 2020-04-10T11:52:41.075559\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Jasmine Young [jasmine@rcsb.rutgers.edu], Chenghua Shao [chenghua@rcsb.rutgers.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Glycosylation Sites (RCSB PDB) dataset contains rat [taxid:11106] proteins glycosites mapped from the associated RCSB PDB Id's using SIFTS database (https://www.ebi.ac.uk/pdbe/docs/sifts/). The glycosylation data (PDB ID, GlycoSite, Chain ID, Sugar (first link)) was retrieved from RCSB group. [www.rcsb.org, Nucleic Acids Research, 28: 235-242.(https://www.ncbi.nlm.nih.gov/pmc/articles/PMC102472/)].\n\nDescription Domain\n Keywords\n - glycosylation\n - reported glycosylation\n - predicted glycosylation\n - UniProtKB\n - PubMed\n - Evidence and conclusion Ontology\n\n Pipeline Steps\n - Step-1: The script extracts the PDB IDs and PDB glycosite from the input .tsv files and maps it to the corresponding UniProtKB accessions and position using the coordinate file downloaded from the SIFTS database using the formula:(SP_BEG-RES_BEG)+ PDB-Position)]. The script also validates the UniProtKB glycosite (amino acid + position) with the corresponding fasta sequences downloaded from UniProtKB.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: N-linked-ARG-details\n URI: https://data.glygen.org/ln2wwwdata/source/N-linked-ARG-details\n Name: O-linked-ASP-details\n URI: https://data.glygen.org/ln2wwwdata/source/O-linked-ASP-details\n Name: O-linked-GLU-details\n URI: https://data.glygen.org/ln2wwwdata/source/O-linked-GLU-details\n Name: O-linked-SER-details\n URI: https://data.glygen.org/ln2wwwdata/source/O-linked-SER-details\n Name: O-linked-THR-details\n URI: https://data.glygen.org/ln2wwwdata/source/O-linked-THR-details\n Name: O-linked-TYR-details\n URI: https://data.glygen.org/ln2wwwdata/source/O-linked-TYR-details\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Name: pdb_chain_uniprot_2018_11_8_11_44_50.csv\n URI: https://data.glygen.org/ln2wwwdata/source/pdb_chain_uniprot_2018_11_8_11_44_50.csv\n Name: rat_protein_canonicalsequences.fasta\n URI: https://data.glygen.org/ln2wwwdata/source/rat_protein_canonicalsequences.fasta\n Output Subdomain\n Name: rat_proteoform_glycosylation_sites_pdb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_proteoform_glycosylation_sites_pdb.csv\n Name: rat_proteoform_glycosylation_sites_pdb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_proteoform_glycosylation_sites_pdb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"23\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"49\"\n Name: \"xref_id\"\n Description: \"\"\n Unique Values: \"37\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"2\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"2\"\n Name: \"src_xref_key\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"pdb_id\"\n Description: \"4-character id assigned to each protein structure in Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)\"\n Unique Values: \"37\"\n Name: \"src_xref_id\"\n Description: \"\"\n Unique Values: \"37\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"1\"\n Name: \"amino_acid_chain\"\n Description: \"Amino acid chain in pdb\"\n Unique Values: \"5\"\n Name: \"carb_name\"\n Description: \"\"\n Unique Values: \"3\"\n Name: \"glycosylation_site_pdb\"\n Description: \"Site on the protein sequence of the PDB entry where glycosylation is observed\"\n Unique Values: \"48\"\n Name: \"xref_key\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.5.36/reviewed/rat_proteoform_glycosylation_sites_pdb.csv" }