{
    "bcoid": "GLY_000434",
    "title": "SARS-CoV2 Proteome Masterlist (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Proteome Materlist dataset contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_masterlist.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "Protein Canonical Accessions",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD2-1...",
                "reviewed..."
            ],
            [
                "P0DTD1-1...",
                "reviewed..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "status..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_name"
                },
                {
                    "type": "string",
                    "label": "reviewed_isoforms"
                },
                {
                    "type": "string",
                    "label": "unreviewed_isoforms"
                }
            ],
            [
                "P0DTD2-1",
                "reviewed",
                "",
                "P0DTD2-1",
                ""
            ],
            [
                "P0DTD1-1",
                "reviewed",
                "rep",
                "P0DTD1-1",
                ""
            ],
            [
                "A0A663DJA2-1",
                "unreviewed",
                "ORF10",
                "",
                "A0A663DJA2-1"
            ],
            [
                "P0DTD3-1",
                "reviewed",
                "",
                "P0DTD3-1",
                ""
            ],
            [
                "P0DTC7-1",
                "reviewed",
                "",
                "P0DTC7-1",
                ""
            ],
            [
                "P0DTC6-1",
                "reviewed",
                "",
                "P0DTC6-1",
                ""
            ],
            [
                "P0DTC5-1",
                "reviewed",
                "",
                "P0DTC5-1",
                ""
            ],
            [
                "P0DTC4-1",
                "reviewed",
                "E",
                "P0DTC4-1",
                ""
            ],
            [
                "P0DTC3-1",
                "reviewed",
                "",
                "P0DTC3-1",
                ""
            ],
            [
                "P0DTC2-1",
                "reviewed",
                "S",
                "P0DTC2-1",
                ""
            ],
            [
                "P0DTC1-1",
                "reviewed",
                "",
                "P0DTC1-1",
                ""
            ],
            [
                "P0DTD8-1",
                "reviewed",
                "",
                "P0DTD8-1",
                ""
            ],
            [
                "P0DTC9-1",
                "reviewed",
                "N",
                "P0DTC9-1",
                ""
            ],
            [
                "P0DTC8-1",
                "reviewed",
                "",
                "P0DTC8-1",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Proteome Masterlist (UniProtKB)\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-04-03T11:00:44.846784\n\nModified on\n   - 2020-04-10T12:27:34.596941\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Proteome Materlist dataset contains sarscov2 [taxid:2697049] UniProtKB canonical accessions mapped to the reviewed (SwissProt) and unreviewed (TrEMBL) UniProtKB isoforms via gene grouping. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - canonical accessions\n   - gene name\n   - protein isoforms\n   - complete proteome\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB proteome data from the triplestore containing triples from nt file to map UniProtKB canonical accessions to reviewed and unreviewed isoforms via gene grouping\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_masterlist.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_masterlist.csv\n      Name: sarscov2_protein_masterlist.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_masterlist.stat.csv\n\nFields\n      Name: \"status\"\n     Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n      Unique Values: \"2\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"14\"\n      Name: \"unreviewed_isoforms\"\n     Description: \"Protein records from UniProtKB/TrEMBL database that have been computationally annotated\"\n      Unique Values: \"2\"\n      Name: \"gene_name\"\n     Description: \"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\n      Unique Values: \"6\"\n      Name: \"reviewed_isoforms\"\n     Description: \"Protein records from UniProtKB/SwissProt database that have been manually curated and annotated based on experimental results\n      Unique Values: \"14\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/sarscov2_protein_masterlist.csv"
}