{ "bcoid": "GLY_000405", "title": "Human NCBI Protein Linkouts", "description": "The Human NCBI Protein Linkouts contains human [taxid:9606] NCBI RefSeq accessions with their corresponding ...", "filename": "human_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "NCBI Linkouts", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", 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"https://glygen.org/protein/Q70EL4", "", "", "", "" ], [ "10227", "Protein", "NP_001182665.1", "https://glygen.org/protein/Q8TBF2", "", "", "", "" ], [ "10227", "Protein", "NP_001188465.1", "https://glygen.org/protein/Q15573", "", "", "", "" ], [ "10227", "Protein", "NP_001230085.1", "https://glygen.org/protein/Q15572", "", "", "", "" ], [ "10227", "Protein", "NP_001035904.1", "https://glygen.org/protein/Q9BQP9", "", "", "", "" ], [ "10227", "Protein", "NP_078870.1", "https://glygen.org/protein/Q9H999", "", "", "", "" ], [ "10227", "Protein", "NP_001158503.1", "https://glygen.org/protein/P23919", "", "", "", "" ], [ "10227", "Protein", "NP_620712.2", "https://glygen.org/protein/Q8NHX4", "", "", "", "" ], [ "10227", "Protein", "NP_620714.2", "https://glygen.org/protein/Q8NHX9", "", "", "", "" ], [ "10227", "Protein", "NP_001099035.2", "https://glygen.org/protein/A8MU46", "", "", "", "" ], [ "10227", "Protein", "NP_001013679.2", "https://glygen.org/protein/Q6ZNW5", "", "", "", "" ], [ "10227", "Protein", "NP_061944.2", "https://glygen.org/protein/Q9NXR8", "", "", "", "" ], [ "10227", "Protein", "NP_079526.1", "https://glygen.org/protein/Q9C0H2", "", "", "", "" ], [ "10227", "Protein", "NP_001295136.1", "https://glygen.org/protein/Q9C0H5", "", "", "", "" ], [ "10227", "Protein", "NP_001118228.1", "https://glygen.org/protein/Q4VXU2", "", "", "", "" ], [ "10227", "Protein", "NP_061990.2", "https://glygen.org/protein/Q9C0H6", "", "", "", "" ], [ "10227", "Protein", "NP_079524.2", "https://glygen.org/protein/Q9C0H9", "", "", "", "" ], [ "10227", "Protein", "NP_001137451.1", "https://glygen.org/protein/Q9NXR1", "", "", "", "" ], [ "10227", "Protein", "NP_001163935.1", "https://glygen.org/protein/Q00537", "", "", "", "" ], [ "10227", "Protein", "NP_001163931.1", "https://glygen.org/protein/Q00536", "", "", "", "" ], [ "10227", "Protein", "NP_001273650.1", "https://glygen.org/protein/Q9NXR5", "", "", "", "" ], [ "10227", "Protein", "NP_004187.2", "https://glygen.org/protein/Q00532", "", "", "", "" ], [ "10227", "Protein", "NP_115972.2", "https://glygen.org/protein/Q96J66", "", "", "", "" ], [ "10227", "Protein", "NP_004036.1", "https://glygen.org/protein/O00244", "", "", "", "" ], [ "10227", "Protein", "NP_037376.2", "https://glygen.org/protein/Q9UBM8", "", "", "", "" ], [ "10227", "Protein", "NP_001135920.1", "https://glygen.org/protein/Q9H2V7", "", "", "", "" ], [ "10227", "Protein", "NP_001077379.1", "https://glygen.org/protein/O00241", "", "", "", "" ], [ "10227", "Protein", "NP_001230005.1", "https://glygen.org/protein/O00716", "", "", "", "" ], [ "10227", "Protein", "NP_001017392.2", "https://glygen.org/protein/Q8IX01", "", "", "", "" ], [ "10227", "Protein", "NP_001254480.1", "https://glygen.org/protein/Q9UBM1", "", "", "", "" ], [ "10227", "Protein", "NP_001093421.1", "https://glygen.org/protein/A8MTA8", "", "", "", "" ], [ "10227", "Protein", "NP_055174.1", "https://glygen.org/protein/Q9UBM4", "", "", "", "" ], [ "10227", "Protein", "NP_001186670.1", "https://glygen.org/protein/P24522", "", "", "", "" ], [ "10227", "Protein", "NP_000290.2", "https://glygen.org/protein/Q13835", "", "", "", "" ], [ "10227", "Protein", "NP_001001957.2", "https://glygen.org/protein/Q7Z3T1", "", "", "", "" ], [ "10227", "Protein", "NP_001138392.1", "https://glygen.org/protein/A0AVF1", "", "", "", "" ], [ "10227", "Protein", "NP_001191892.1", "https://glygen.org/protein/P40424", "", "", "", "" ], [ "10227", "Protein", "NP_002577.2", "https://glygen.org/protein/P40425", "", "", "", "" ], [ "10227", "Protein", "NP_009139.1", "https://glygen.org/protein/P09001", "", "", "", "" ], [ "10227", "Protein", "NP_001317576.1", "https://glygen.org/protein/Q8IZK6", "", "", "", "" ], [ "10227", "Protein", "NP_001257420.1", "https://glygen.org/protein/P40429", "", "", "", "" ], [ "10227", "Protein", "NP_001317178.1", "https://glygen.org/protein/P51991", "", "", "", "" ], [ "10227", "Protein", "NP_004631.1", "https://glygen.org/protein/Q13838", "", "", "", "" ], [ "10227", "Protein", "NP_001274691.1", "https://glygen.org/protein/O00337", "", "", "", "" ], [ "10227", "Protein", "NP_001008781.2", "https://glygen.org/protein/Q8TDW7", "", "", "", "" ], [ "10227", "Protein", "NP_001028725.1", "https://glygen.org/protein/Q5M775", "", "", "", "" ], [ "10227", "Protein", "NP_001076428.1", "https://glygen.org/protein/Q8WTV0", "", "", "", "" ], [ "10227", "Protein", "NP_114413.1", "https://glygen.org/protein/Q9H2I8", "", "", "", "" ], [ "10227", "Protein", "NP_000342.2", "https://glygen.org/protein/P08842", "", "", "", "" ], [ "10227", "Protein", "YP_003024027.1", "https://glygen.org/protein/P03891", "", "", "", "" ], [ "10227", "Protein", "NP_001012419.1", "https://glygen.org/protein/Q5VUR7", "", "", "", "" ], [ "10227", "Protein", "NP_001020331.1", "https://glygen.org/protein/P48960", "", "", "", "" ], [ "10227", "Protein", "YP_003024033.1", "https://glygen.org/protein/P03897", "", "", "", "" ], [ "10227", "Protein", "NP_000468.1", "https://glygen.org/protein/P02768", "", "", "", "" ], [ "10227", "Protein", "NP_002346.1", "https://glygen.org/protein/P20645", "", "", "", "" ], [ "10227", "Protein", "NP_000994.1", "https://glygen.org/protein/P05386", "", "", "", "" ], [ "10227", "Protein", "NP_000995.1", "https://glygen.org/protein/P05387", "", "", "", "" ], [ "10227", "Protein", "NP_001013417.1", "https://glygen.org/protein/P24863", "", "", "", "" ], [ "10227", "Protein", "NP_000275.1", "https://glygen.org/protein/P08559", "", "", "", "" ], [ "10227", "Protein", "NP_001624.1", "https://glygen.org/protein/P02760", "", "", "", "" ], [ "10227", "Protein", "NP_000598.2", "https://glygen.org/protein/P02763", "", "", "", "" ], [ "10227", "Protein", "NP_001613.2", "https://glygen.org/protein/P02765", "", "", "", "" ], [ "10227", "Protein", "NP_000362.1", "https://glygen.org/protein/P02766", "", "", "", "" ] ] }, "readme": "Name\n - Human NCBI Protein Linkouts\n\nVersion\n - 1.5.30\n\nCreated on\n - 2020-03-20T15:53:27.297125\n\nModified on\n - 2020-04-07T10:34:22.920866\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human NCBI Protein Linkouts contains human [taxid:9606] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_ncbi_linkouts.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_ncbi_linkouts.csv\n Name: human_protein_ncbi_linkouts.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"18932\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"18932\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/human_protein_ncbi_linkouts.csv" }