{
    "bcoid": "GLY_000374",
    "title": "HCV1a UniProtKB Xref Pfam",
    "description": "The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref Pfam contains hcv1a [taxid:11108] UniProtKB ...",
    "filename": "hcv1a_protein_xref_pfam.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1a, isolate H)",
        "molecule": "Protein",
        "tags": "Pfam cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0C045-1...",
                "protein_xref..."
            ],
            [
                "P27958-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P0C045-1",
                "protein_xref_pfam",
                "PF01543",
                "HCV_capsid"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF00998",
                "RdRP_3"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01001",
                "HCV_NS4b"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01006",
                "HCV_NS4a"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01506",
                "HCV_NS5a"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01538",
                "HCV_NS2"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01539",
                "HCV_env"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01542",
                "HCV_core"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01543",
                "HCV_capsid"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF01560",
                "HCV_NS1"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF02907",
                "Peptidase_S29"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF07652",
                "Flavi_DEAD"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF08300",
                "HCV_NS5a_1a"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF08301",
                "HCV_NS5a_1b"
            ],
            [
                "P27958-1",
                "protein_xref_pfam",
                "PF12941",
                "HCV_NS5a_C"
            ]
        ]
    },
    "readme": "Name\n   - HCV1a UniProtKB Xref Pfam\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-03-14T17:45:09.021420\n\nModified on\n   - 2020-04-09T17:44:45.309455\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref Pfam contains hcv1a [taxid:11108] UniProtKB canonical accessions cross-referenced to Pfam database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models.\n\nDescription Domain\n   Keywords\n   - protein family\n   - Pfam\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Pfam database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1a.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-hepatitis-c-virus-1a.nt\n   Output Subdomain\n      Name: hcv1a_protein_xref_pfam.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_pfam.csv\n      Name: hcv1a_protein_xref_pfam.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_pfam.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"2\"\n      Name: \"xref_label\"\n     Description: \"\"\n      Unique Values: \"14\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"14\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/hcv1a_protein_xref_pfam.csv"
}