{
    "bcoid": "GLY_000368",
    "title": "HCV1a UniProtKB Xref IntAct",
    "description": "The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref IntAct dataset contains hcv1a [taxid:11108] ...",
    "filename": "hcv1a_protein_xref_intact.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1a, isolate H)",
        "molecule": "Protein",
        "tags": "Intact",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0C045-1...",
                "protein_xref..."
            ],
            [
                "P27958-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "P0C045-1",
                "protein_xref_intact",
                "P0C045",
                ""
            ],
            [
                "P27958-1",
                "protein_xref_intact",
                "P27958",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1a UniProtKB Xref IntAct\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-03-14T17:27:47.710028\n\nModified on\n   - 2020-04-09T17:39:53.805662\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1a, isolate H) UniProtKB Xref IntAct dataset contains hcv1a [taxid:11108] UniProtKB canonical accessions cross-referenced to IntAct database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. The IntAct Team also produce the Complex Portal.\n\nDescription Domain\n   Keywords\n   - molecular interaction data\n   - protein-protein interaction\n   - IntAct\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to IntAct database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1a.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-hepatitis-c-virus-1a.nt\n      Name: hcv1a_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_masterlist.csv\n   Output Subdomain\n      Name: hcv1a_protein_xref_intact.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_intact.csv\n      Name: hcv1a_protein_xref_intact.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_intact.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"2\"\n      Name: \"xref_label\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"2\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/hcv1a_protein_xref_intact.csv"
}