{
    "bcoid": "GLY_000488",
    "title": "HCV1b Protein Diseases",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Diseases dataset contains disease caused ...",
    "filename": "hcv1b_protein_disease.csv",
    "filetype": "csv",
    "categories": {
        "species": "Hepatitis C virus (genotype 1b, isolate Japanese)",
        "molecule": "Protein",
        "tags": "disease",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "protein_xref..."
            ],
            [
                "P26662-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "database_label"
                },
                {
                    "type": "string",
                    "label": "do_id"
                }
            ],
            [
                "P26662-1",
                "protein_xref_glygen_ds",
                "GLYGDS000488",
                "",
                "1883"
            ],
            [
                "P26662-1",
                "protein_xref_glygen_ds",
                "GLYGDS000488",
                "",
                "5082"
            ],
            [
                "P26662-1",
                "protein_xref_glygen_ds",
                "GLYGDS000488",
                "",
                "684"
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Protein Diseases\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-04-29T16:14:59.174043\n\nModified on\n   - 2020-04-29T21:51:34.143059\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Protein Diseases dataset contains disease caused by hcv1b virus [taxid:11116] which is Hepatitis C, Liver Cirrhosis and Hepatocellular carcinoma and is mapped to all UniProtKB canonical accessions. The dataset contains Hepatitis C, Liver Cirrhosis and Hepatocellular carcinoma disease ontology ID and GlyGen dataset ID. The input file for this dataset is compiled by GlyGen. If you use this dataset please give proper attribution to GlyGen.\n\nDescription Domain\n   Keywords\n   - Hepatitis C\n   - Liver Cirrhosis\n   - Hepatocellular Carcinoma\n   - disease\n   - HCV\n\n   Pipeline Steps\n   - Step-1: The script extracts the UniProtKB canonical accessions, database name, database ID and DOID from the input file as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1b_protein_disease.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/compiled/hcv1b_protein_disease.csv\n   Output Subdomain\n      Name: hcv1b_protein_disease.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/hcv1b_protein_disease.csv\n      Name: hcv1b_protein_disease.stat.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/hcv1b_protein_disease.stat.csv\n\nFields\n      Name: \"do_id\"\n     Description: \"Disease Ontology identifier\"\n      Unique Values: \"3\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"1\"\n      Name: \"database_label\"\n     Description: \"Label or name assigned to the corresponding identifier in the source database\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/hcv1b_protein_disease.csv"
}