{
    "bcoid": "GLY_000485",
    "title": "Rat Proteoform Citations (GlyConnect)",
    "description": "The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...",
    "filename": "rat_proteoform_citations_glyconnect.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Proteoform",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P48199-1...",
                "8486673..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "pmid..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "P48199-1",
                "8486673",
                "Studies on the carbohydrate moiety and on the biosynthesis of rat C-reactive protein.",
                "The Journal of biological chemistry",
                "1993 May 15",
                "Sambasivam H, Rassouli M, Murray RK, Nagpurkar A, Mookerjea S, Azadi P, Dell A, Morris HR",
                "protein_xref_glyconnect",
                "114"
            ]
        ]
    },
    "readme": "Name\n   - Rat Proteoform Citations (GlyConnect)\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-04-28T11:07:38.533264\n\nModified on\n   - 2020-04-28T11:09:38.064805\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n   Output Subdomain\n      Name: rat_proteoform_citations_glyconnect.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_proteoform_citations_glyconnect.csv\n      Name: rat_proteoform_citations_glyconnect.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_proteoform_citations_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"Authors of the associated publications\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/rat_proteoform_citations_glyconnect.csv"
}