{
    "bcoid": "GLY_000484",
    "title": "Mouse Proteoform Citations (GlyConnect)",
    "description": "The Mouse Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...",
    "filename": "mouse_proteoform_citations_glyconnect.csv",
    "filetype": "csv",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Proteoform",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q09163-1...",
                "9118998..."
            ],
            [
                "P01869-1...",
                "2108149..."
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        "headers": [
            "uniprotkb_ca...",
            "pmid..."
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        "colwidth": [
            "40%",
            "20%"
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        "data": [
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                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
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                {
                    "type": "string",
                    "label": "xref_id"
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            ],
            [
                "Q09163-1",
                "9118998",
                "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.",
                "European journal of biochemistry",
                "1997 Mar 1",
                "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P",
                "protein_xref_glyconnect",
                "153"
            ],
            [
                "P01869-1",
                "2108149",
                "The polypeptide of immunoglobulin G influences its galactosylation in vivo.",
                "The Journal of biological chemistry",
                "1990 Apr 5",
                "Lee SO, Connolly JM, Ramirez-Soto D, Poretz RD",
                "protein_xref_glyconnect",
                "248"
            ],
            [
                "Q05769-1",
                "11258925",
                "Characterization of the glycosylation sites in cyclooxygenase-2 using mass spectrometry.",
                "Biochemistry",
                "2001 Mar 13",
                "Nemeth JF, Hochgesang GP Jr, Marnett LJ, Caprioli RM",
                "protein_xref_glyconnect",
                "514"
            ],
            [
                "Q921I1-1",
                "30899004",
                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
                "Nature communications",
                "2019 Mar 21",
                "Riley NM, Hebert AS, Westphall MS, Coon JJ",
                "protein_xref_glyconnect",
                "556"
            ],
            [
                "Q921I1-1",
                "20571061",
                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
                "protein_xref_glyconnect",
                "556"
            ],
            [
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                "30899004",
                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
                "Nature communications",
                "2019 Mar 21",
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                "590"
            ],
            [
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
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                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
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                "2010 Nov",
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            [
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                "Molecular & cellular proteomics : MCP",
                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
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                "Molecular & cellular proteomics : MCP",
                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
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            ],
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
                "protein_xref_glyconnect",
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            ],
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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            ],
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
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                "protein_xref_glyconnect",
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            ],
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
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                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
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                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
                "protein_xref_glyconnect",
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                "20571061",
                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
                "protein_xref_glyconnect",
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            ],
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                "20571061",
                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
                "Molecular & cellular proteomics : MCP",
                "2010 Nov",
                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
                "protein_xref_glyconnect",
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                "Sialic acid-focused quantitative mouse serum glycoproteomics by multiple reaction monitoring assay.",
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                "Kurogochi M, Matsushista T, Amano M, Furukawa J, Shinohara Y, Aoshima M, Nishimura S",
                "protein_xref_glyconnect",
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                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
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                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
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                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
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                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
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                "Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis.",
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    "readme": "Name\n   - Mouse Proteoform Citations (GlyConnect)\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-04-28T11:04:45.973121\n\nModified on\n   - 2020-04-28T11:06:57.082293\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - GlyConnect\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_glyconnect.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/mouse_proteoform_citations_glyconnect.csv\n      Name: mouse_proteoform_citations_glyconnect.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/mouse_proteoform_citations_glyconnect.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"724\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"725\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"5\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"5\"\n      Name: \"authors\"\n     Description: \"Authors of the associated publications\"\n      Unique Values: \"5\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"5\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"5\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/mouse_proteoform_citations_glyconnect.csv"
}