{
    "bcoid": "GLY_000482",
    "title": "SARS CoV 2 Proteoform Citations (UniCarbKB)",
    "description": "Citation details (such as title, journal_name, publication_date, authors) corresponding to the Digital ...",
    "filename": "sarscov2_proteoform_citations_unicarbkb_literature.csv",
    "filetype": "csv",
    "categories": {
        "status": "Reviewed",
        "molecule": "Proteoform",
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "tags": "Citation",
        "file_type": "csv",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTC2-1...",
                "..."
            ],
            [
                "P0DTC2-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "pmid..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "doi"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "P0DTC2-1",
                "",
                "10.1101/2020.03.26.010322",
                "Site-specific analysis of the SARS-CoV-2 glycan shield",
                "bioRxiv",
                "2020",
                "Watanabe Y., Allen J.D., Wrapp D., McLellan J.S.,Crispin M.",
                "protein_xref_unicarbkb",
                "P0DTC2"
            ],
            [
                "P0DTC2-1",
                "",
                "10.1101/2020.04.01.020966",
                "Deducing the N- and O-glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2",
                "bioRxiv",
                "2020",
                "Shajahan A., Supekar N. T., Gleinich A. S., Azadi P.",
                "protein_xref_unicarbkb",
                "P0DTC2"
            ],
            [
                "P0DTC2-1",
                "",
                "10.1101/2020.03.28.013276",
                "Site-specific N-glycosylation Characterization of Recombinant SARS-CoV-2 Spike Proteins using High-Resolution Mass Spectrometry",
                "bioRxiv",
                "2020",
                "Zhang Y., Zhao W., Mao Y., Wang S., Zhong Y., Su T., Gong M., Lu X., Cheng J., Yang H.",
                "protein_xref_unicarbkb",
                "P0DTC2"
            ]
        ]
    },
    "readme": "Name\n   - SARS CoV 2 Proteoform Citations (UniCarbKB)\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2020-04-20T17:08:49.084209\n\nModified on\n   - 2020-05-01T15:24:30.890814\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@email.gwu.edu]\n\nAuthors\n   - Rahi Navelkar [rsn13@gwu.edu], Matthew Campbell  [m.campbell2@griffith.edu.au]\n\nChecksum\n   - \n\nUsability Domain\n   - Citation details (such as title, journal_name, publication_date, authors) corresponding to the Digital Object Identifiers (DOI) present in dataset https://data.glygen.org/GLYDS000479\n\nDescription Domain\n   Keywords\n   - Proteins\n   - DOI (Digital Object Identifier)\n\n   Pipeline Steps\n   - Step-1: The DOI(s) were extracted from dataset https://data.glygen.org/GLYDS000479. The corresponding details were manually compiled by the provider. \n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov2_protein_citations_unicarbkb_literature.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/sarscov2_protein_citations_unicarbkb_literature.csv\n   Output Subdomain\n      Name: sarscov2_proteoform_citations_unicarbkb_literature.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/sarscov2_proteoform_citations_unicarbkb_literature.csv\n      Name: sarscov2_proteoform_citations_unicarbkb_literature.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/sarscov2_proteoform_citations_unicarbkb_literature.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"1\"\n      Name: \"doi\"\n     Description: \"Digital Object Identifier of a publication.\"\n      Unique Values: \"3\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"3\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"Authors of the associated publications\"\n      Unique Values: \"3\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/sarscov2_proteoform_citations_unicarbkb_literature.csv"
}