{ "bcoid": "GLY_000449", "title": "SARS-CoV1 UniProtKB Xref InterPro", "description": "The SARS coronavirus (SARS-CoV-1) UniProtKB Xref InterPro contains sarscov1 [taxid:694009] UniProtKB ...", "filename": "sarscov1_protein_xref_interpro.csv", "filetype": "csv", "categories": { "species": "SARS coronavirus (SARS-CoV-1)", "molecule": "Protein", "tags": "Interpro cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P59596-1...", "protein_xref..." ], [ "P0C6U8-1...", "protein_xref..." ] ], "headers": [ "uniprotkb_ca...", "xref_key..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "xref_label" } ], [ "P59596-1", "protein_xref_interpro", "IPR002574", "Corona_M" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR009003", "Peptidase_S1_PA" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR002589", "Macro_dom" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR008740", "Peptidase_C30" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR013016", "Peptidase_C30/C16" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR014822", "NSP9" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR014827", "Viral_protease" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR014828", "NSP7" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR014829", "NSP8" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR018995", "RNA_synth_NSP10_coronavirus" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR021590", "NSP1" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR022733", "Nsp3_PL2pro" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR024358", "SARS-CoV_Nsp3_N" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR024375", "Nsp3_coronavir" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR032505", "Corona_NSP4_C" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR032592", "NAR_dom" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR036333", "NSP10_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR036499", "NSP9_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR037204", "NSP7_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR037230", "NSP8_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR038030", "NSP1_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR038083", "R1a/1ab" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR038123", "NSP4_C_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR038166", "Nsp3_PL2pro_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR038400", "Nsp3_coronavir_sf" ], [ "P0C6U8-1", "protein_xref_interpro", "IPR042570", "NAR_sf" ], [ "P59594-1", "protein_xref_interpro", "IPR002552", "Corona_S2" ], [ "P59594-1", "protein_xref_interpro", "IPR018548", "Spike_rcpt-bd" ], [ "P59594-1", "protein_xref_interpro", "IPR027400", "S_HR2" ], [ "P59594-1", "protein_xref_interpro", "IPR032500", "Spike_N" ], [ "P59594-1", "protein_xref_interpro", "IPR036326", "Spike_rcpt-bd_sf" ], [ "P59594-1", "protein_xref_interpro", "IPR042578", "BETA_CORONA_SPIKE" ], [ "P59595-1", "protein_xref_interpro", "IPR001218", "Corona_nucleocap" ], [ "P59595-1", "protein_xref_interpro", "IPR037179", "Nucleocapsid_C" ], [ "P59595-1", "protein_xref_interpro", "IPR037195", "Nucleocapsid_N" ], [ "Q7TLC7-1", "protein_xref_interpro", "IPR035113", "DUF5515" ], [ "Q80H93-1", "protein_xref_interpro", "IPR022722", "Corona_NS8" ], [ "P59635-1", "protein_xref_interpro", "IPR014888", "SARS_X4" ], [ "P59635-1", "protein_xref_interpro", "IPR036495", "SARS_X4_sf" ], [ "Q7TFA1-1", "protein_xref_interpro", "IPR021532", "SARS-CoV_Orf7b" ], [ "Q7TFA0-1", "protein_xref_interpro", "IPR022722", "Corona_NS8" ], [ "P59633-1", "protein_xref_interpro", "IPR022117", "SARS_3b" ], [ "P59632-1", "protein_xref_interpro", "IPR024407", "SARS_coronavirus_Orf3/3a" ], [ "P59637-1", "protein_xref_interpro", "IPR003873", "NS3/E" ], [ "P59636-1", "protein_xref_interpro", "IPR018542", "SARS_lipid-bd" ], [ "P59636-1", "protein_xref_interpro", "IPR037223", "SARS_ORF-9b" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR027417", "P-loop_NTPase" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR029063", "SAM-dependent_MTases" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR009003", "Peptidase_S1_PA" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR002589", "Macro_dom" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR037227", "EndoU-like" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR008740", "Peptidase_C30" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR009461", "Coronavirus_NSP16" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR009466", "NSP11" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR009469", "RNA_pol_N_coronovir" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR013016", "Peptidase_C30/C16" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR014822", "NSP9" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR014827", "Viral_protease" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR014828", "NSP7" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR014829", "NSP8" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR018995", "RNA_synth_NSP10_coronavirus" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR021590", "NSP1" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR022733", "Nsp3_PL2pro" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR024358", "SARS-CoV_Nsp3_N" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR024375", "Nsp3_coronavir" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR027351", "(+)RNA_virus_helicase_core_dom" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR027352", "CV_ZBD" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR032505", "Corona_NSP4_C" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR032592", "NAR_dom" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR036333", "NSP10_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR036499", "NSP9_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR037204", "NSP7_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR037230", "NSP8_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR038030", "NSP1_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR038083", "R1a/1ab" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR038123", "NSP4_C_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR038166", "Nsp3_PL2pro_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR038400", "Nsp3_coronavir_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR042515", "Nsp15_N" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR042570", "NAR_sf" ], [ "P0C6X7-1", "protein_xref_interpro", "IPR007094", "RNA-dir_pol_PSvirus" ], [ "P59634-1", "protein_xref_interpro", "IPR022736", "SARS_NS6" ] ] }, "readme": "Name\n - SARS-CoV1 UniProtKB Xref InterPro\n\nVersion\n - 1.5.30\n\nCreated on\n - 2020-04-03T12:25:01.015736\n\nModified on\n - 2020-04-09T18:52:21.890260\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The SARS coronavirus (SARS-CoV-1) UniProtKB Xref InterPro contains sarscov1 [taxid:694009] UniProtKB canonical accessions cross-referenced to InterPro database accessions/identifiers. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to new protein sequences in order to functionally characterise them.\n\nDescription Domain\n Keywords\n - protein family\n - protein domain\n - protein functional site\n - InterPro\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB accessions that are cross-referenced to InterPro database accessions/identifiers from the triplestore containing triples from nt file and maps to the UniProtKB canonical accessions and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-human-sars-coronavirus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/uniprot-proteome-human-sars-coronavirus.nt\n Name: sarscov1_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/sarscov1_protein_masterlist.csv\n Output Subdomain\n Name: sarscov1_protein_xref_interpro.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/sarscov1_protein_xref_interpro.csv\n Name: sarscov1_protein_xref_interpro.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/sarscov1_protein_xref_interpro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"15\"\n Name: \"xref_label\"\n Description: \"\"\n Unique Values: \"56\"\n Name: \"xref_id\"\n Description: \"\"\n Unique Values: \"56\"\n Name: \"xref_key\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/sarscov1_protein_xref_interpro.csv" }