{
    "bcoid": "GLY_000312",
    "title": "Rat Protein Citations (Reactome)",
    "description": "The Rat Protein Citations (Reactome) dataset contains publication information for rat [taxid:10116] UniProtKB ...",
    "filename": "rat_protein_citations_reactome.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Protein Citations",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P08050-1...",
                "7691412..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "pmid..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "P08050-1",
                "7691412",
                "Multisubunit assembly of an integral plasma membrane channel protein, gap junction connexin43, occurs after exit from the ER.",
                "Cell",
                "1993 Sep 24",
                "Musil LS, Goodenough DA",
                "protein_xref_reactome",
                "R-RNO-215126"
            ]
        ]
    },
    "readme": "Name\n   - Rat Protein Citations (Reactome)\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2019-11-30T12:49:42.900057\n\nModified on\n   - 2020-04-10T12:12:38.822163\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Citations (Reactome) dataset contains publication information for rat [taxid:10116] UniProtKB accessions that includes PMID, journal name, date and author and title. The dataset is derived from 2019-09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Reactome\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the Reactome publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the Reactome IDs and maps it to the UniProtKB canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/uniprot-proteome-rattus-norvegicus.nt\n      Name: rat_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_masterlist.csv\n   Output Subdomain\n      Name: rat_protein_citations_reactome.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_citations_reactome.csv\n      Name: rat_protein_citations_reactome.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_citations_reactome.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"Authors of the associated publications\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_citations_reactome.csv"
}