{ "bcoid": "GLY_000287", "title": "Glycan Sequences Glycam IUPAC", "description": "The dataset provides the glycan sequences in Glycam IUPAC format for the associated glycans (GlyTouCan ...", "filename": "glycan_sequences_glycam_iupac.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "GLYCAM IUPAC sequence format", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00024MO...", "DGlcpb1-3DGl..." ], [ "G00025MO...", "DGlcpb1-4DGl..." ] ], "headers": [ "glytoucan_ac...", "sequence_gly..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "sequence_glycam_iupac" } ], [ "G00024MO", "DGlcpb1-3DGlcpb1-3DGlcpb1-" ], [ "G00025MO", "DGlcpb1-4DGlcpb1-4DGlcpb1-4DGlcpb1-" ], [ "G00027MO", "DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-" ], [ "G00031MO", "DGalpb1-3DGalpNAca1-" ], [ "G00033MO", "DGalpb1-3[DGlcpNAcb1-6]DGalpNAca1-" ], [ "G00035MO", "DGlcpNAcb1-3DGalpNAca1-" ], [ "G00037MO", "DGlcpNAcb1-3[DGlcpNAcb1-6]DGalpNAca1-" ], [ "G00039MO", "DGalpNAca1-3DGalpNAca1-" ], [ "G00041MO", "DGlcpNAcb1-6DGalpNAca1-" ], [ "G00043MO", "DGalpNAca1-6DGalpNAca1-" ], [ "G00048MO", "LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-" ], [ "G00049MO", "DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G00050MO", "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G00051MO", "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00052MO", "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00053MO", "DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-" ], [ "G00054MO", "DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00055MO", "DGalpb1-4DGlcpNAcb1-" ], [ "G00056MO", "DGalpb1-3DGlcpNAcb1-" ], [ "G00057MO", "DGalpNAcb1-4DGlcpNAcb1-" ], [ "G00058MO", "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-" ], [ "G00059MO", "DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G00060MO", "DGalpa1-4DGalpb1-4DGalpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G00061MO", "DGalpNAcb1-3DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G00062MO", "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-3DGalpb1-" ], [ "G00063MO", "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-3[DNeup5Aca2-6]DGalpNAcb1-" ], [ "G00064MO", "DGlcpNAca1-3DGalpNAcb1-3DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G00065MO", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-" ], [ "G00066MO", "DGalpNAca1-3[LFucpa1-2]DGalpb1-" ], [ "G00067MO", "DGalpb1-3[LFucpa1-2]DGalpb1-" ], [ "G00068MO", "LFucpa1-2DGalpb1-" ], [ "G00076PK", "DGalpa1-4DGalpb1-4DGlcpNAcb1-" ], [ "G00091RT", "DManpa1-2DManpa1-3[DManpa1-2DManpa1-6]DManpa1-" ], [ "G00094SE", "DGalpa1-3DGalpNAca1-3[LFucpa1-2]DGalpb1-3[DGlcpNAcb1-3DGlcpNAcb1-6]DGalpNAca1-" ], [ "G00123JF", "DXylfb1-" ], [ "G00152LK", "DGlcpb1-3DGlcpb1-3DGlcpb1-3DGlcpa1-3DGlcpb1-3DGlcpb1-" ], [ "G00153LJ", "DGalpb1-2DGalpb1-2DGalpb1-" ], [ "G00157WT", "DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3]DGalpb1-4DGlcpb1-" ], [ "G00176HZ", "DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00199JR", "DManpa1-3DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAca1-" ], [ "G00272VU", "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4DManpa1-3DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00294TN", "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-" ], [ "G00320ZP", "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-3DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00335DM", "DManpa1-2DManpa1-2DManpa1-6[DManpa1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00370EI", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-3DGalpb1-4DGlcpb1-" ], [ "G00371DJ", "DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpNAca1-" ], [ "G00395FS", "DGlcpa1-4DGlcpa1-4DGlcpb1-" ], [ "G00395TQ", "DManpa1-6DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00399LG", "DGalpNAca1-4DGlcpNAcb1-" ], [ "G00413UF", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00463XD", "DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00480KJ", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[DFucpa1-6]DGlcpNAca1-" ], [ "G00514XC", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00536FZ", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00547ZN", "DGalpNAc[4S]b1-4DGlcpNAcb1-2DManpa1-" ], [ "G00591PZ", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[DFucpa1-6]DGlcpNAcb1-" ], [ "G00619DD", "DManpa1-3[DManpa1-6]DManpa1-" ], [ "G00659GQ", "DNeup5Aca2-3DGalp[6S]b1-4[LFucpa1-3]DGlcpNAc[6S]b1-" ], [ "G00662IB", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00666EC", "DNeup5Aca2-6[LFucpa1-2]DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6[LFucpa1-2]DGalpb1-4DGlcpNAcb1-6]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00672PE", "DNeup5Aca2-3DGalp[6S]b1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00674TY", "DManpNAcb1-4DGlcpa1-4DGlcpa1-" ], [ "G00691LW", "LFucpb1-6DGalpa1-" ], [ "G00702NP", "DManpa1-3[DManpa1-6]DManpa1-6[DManpa1-2DManpa1-3]DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00728SN", "DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAca1-" ], [ "G00743WU", "DNeup5Aca2-6DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3[DGalpNAcb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00760ZJ", "DGlcpa1-6DGlcpa1-6DGlcfb1-" ], [ "G00797ZX", "DGalpa1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-4[LFucpa1-2DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DGalpa1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00826SV", "DGalpb1-4DGlcpNAcb1-4DManpa1-3[DGalpb1-4DGlcpNAcb1-4DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00850LT", "DManpa1-6DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00851XQ", "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G00876GU", "DGlcpb1-3DManpa1-2DManpa1-2DManpa1-3[DManpa1-2DManpa1-6[DManpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00883DO", "DGalpb1-4DGlcpNAcb1-4DManpa1-3[DGalpb1-4DGlcpNAcb1-4DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00887EN", "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6DManpa1-6DManpb1-" ], [ "G00891MP", "DManpa1-3DManpa1-" ], [ "G00903RX", "LIdopAa1-3DGalpNAc[6S]b1-" ], [ "G00909GK", "DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6[DGlcpNAcb1-4DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00909PI", "DNeup5Aca2-3DGalpb1-3DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00924FH", "DGalpa1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-3DGalpNAca1-" ], [ "G00925PQ", "DManpa1-6DManpa1-3[DXylpb1-2]DManpb1-4DGlcpNAcb1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00944OL", "DNeup5Aca2-3DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-3]DGalpNAca1-" ], [ "G00951UF", "DGlcpNAcb1-2[DGlcpNAcb1-4][DGlcpNAcb1-6]DManpa1-6[DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00977CB", "DXylpa1-6DGlcpb1-" ], [ "G00978GW", "DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DGalpb1-3]DGalpNAca1-" ] ] }, "readme": "Name\n - Glycan Sequences Glycam IUPAC\n\nVersion\n - 1.5.30\n\nCreated on\n - 2019-11-13T16:15:24.688189\n\nModified on\n - 2020-05-01T15:03:34.197549\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the glycan sequences in Glycam IUPAC format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://dev.glycam.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Glycam IUPAC\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycam_iupac.zip\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/glycam_iupac.zip\n Output Subdomain\n Name: glycan_sequences_glycam_iupac.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/glycan_sequences_glycam_iupac.csv\n Name: glycan_sequences_glycam_iupac.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/glycan_sequences_glycam_iupac.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"5311\"\n Name: \"sequence_glycam_iupac\"\n Description: \"Glycan sequence in an GLYCAM iupac format\"\n Unique Values: \"5311\"", "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/glycan_sequences_glycam_iupac.csv" }