{ "bcoid": "GLY_000283", "title": "Glycan Motif", "description": "The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). ...", "filename": "glycan_motif.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Motif", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00009BX...", "G00055MO..." ], [ "G00009BX...", "G00068MO..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_ac_motif" }, { "type": "string", "label": "motif_name" }, { "type": "string", "label": "is_reducing_end" } ], [ "G00009BX", "G00055MO", "Lactosamine motif", "false" ], [ "G00009BX", "G00068MO", "Blood group H", "false" ], [ "G00012MO", "G00012MO", "Glycosphingolipid Isoglobo series", "true" ], [ "G00012MO", "G00046MO", "Galalpha1-3Gal epitope", "false" ], [ "G00012RZ", "G00026MO", "N-Glycan core basic", "true" ], [ "G00012RZ", "G00030MO", "N-Glycan complex", "true" ], [ "G00012RZ", "G00051MO", "Lewis X", "false" ], [ "G00012RZ", "G00054MO", "Sialyl Lewis X", "false" ], [ "G00012RZ", "G00055MO", "Lactosamine motif", "false" ], [ "G00012RZ", "G00065MO", "VIM", "false" ], [ "G00013MO", "G00013MO", "Glycosphingolipid Muco series", "true" ], [ "G00014MO", "G00014MO", "Glycosphingolipid Arthro series", "true" ], [ "G00014MO", "G00057MO", "LacDiNAc", "false" ], [ "G00015MO", "G00015MO", "Glycosphingolipid Mollu series", "true" ], [ "G00016MO", "G00016MO", "Glycosphingolipid Gala series", "true" ], [ "G00017MO", "G00017MO", "Hyluronan", "false" ], [ "G00018MO", "G00018MO", "Chondroitin 4S", "false" ], [ "G00019MO", "G00019MO", "Dermatansulfate", "false" ], [ "G00020MO", "G00020MO", "Keratansulfate", "false" ], [ "G00021MO", "G00021MO", "Heparin", "false" ], [ "G00021MO", "G54161DR", "Heparin", "false" ], [ "G00022MO", "G00022MO", "LPS core", "false" ], [ "G00023MO", "G00023MO", "Peptidoglycan", "false" ], [ "G00024MO", "G00024MO", "Beta-glucan", "false" ], [ "G00025MO", "G00025MO", "Cellulose like Glc(1-4)n", "true" ], [ "G00025YC", "G00026MO", "N-Glycan core basic", "true" ], [ "G00025YC", "G00030MO", "N-Glycan complex", "true" ], [ "G00025YC", "G00055MO", "Lactosamine motif", "false" ], [ "G00026MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00027JG", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00027JG", "G00034MO", "O-Glycan core 2 fuzzy", "true" ], [ "G00027JG", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00027JG", "G00055MO", "Lactosamine motif", "false" ], [ "G00027JG", "G00068MO", "Blood group H", "false" ], [ "G00027MO", "G00027MO", "N-Glycan truncated motif. First GlcpNAC cut off", "true" ], [ "G00028MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00028MO", "G00028MO", "N-Glycan high mannose", "true" ], [ "G00029MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00029MO", "G00029MO", "N-Glycan hybrid", "true" ], [ "G00030MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00030MO", "G00030MO", "N-Glycan complex", "true" ], [ "G00031MO", "G00031MO", "O-Glycan core 1", "true" ], [ "G00031MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00032MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00033MO", "G00031MO", "O-Glycan core 1", "true" ], [ "G00033MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00033MO", "G00033MO", "O-Glycan core 2", "true" ], [ "G00033MO", "G00034MO", "O-Glycan core 2 fuzzy", "true" ], [ "G00033MO", "G00041MO", "O-Glycan core 6", "true" ], [ "G00033MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00034MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00034MO", "G00034MO", "O-Glycan core 2 fuzzy", "true" ], [ "G00034MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00035MO", "G00035MO", "O-Glycan core 3", "true" ], [ "G00035MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00036MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00037MO", "G00035MO", "O-Glycan core 3", "true" ], [ "G00037MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00037MO", "G00037MO", "O-Glycan core 4", "true" ], [ "G00037MO", "G00038MO", "O-Glycan core 4 fuzzy", "true" ], [ "G00037MO", "G00041MO", "O-Glycan core 6", "true" ], [ "G00037MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00038MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00038MO", "G00038MO", "O-Glycan core 4 fuzzy", "true" ], [ "G00038MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00039MO", "G00039MO", "O-Glycan core 5", "true" ], [ "G00039MO", "G00040MO", "O-Glycan core 5 fuzzy", "true" ], [ "G00040MO", "G00040MO", "O-Glycan core 5 fuzzy", "true" ], [ "G00041MO", "G00041MO", "O-Glycan core 6", "true" ], [ "G00041MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00042MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00043MO", "G00043MO", "O-Glycan core 7", "true" ], [ "G00043MO", "G00044MO", "O-Glycan core 7 fuzzy", "true" ], [ "G00044MO", "G00044MO", "O-Glycan core 7 fuzzy", "true" ], [ "G00045MO", "G00045MO", "GPI anchor core", "false" ], [ "G00046MO", "G00046MO", "Galalpha1-3Gal epitope", "false" ], [ "G00047MO", "G00047MO", "Lewis A", "false" ], [ "G00048MO", "G00047MO", "Lewis A", "false" ], [ "G00048MO", "G00048MO", "Lewis B", "false" ], [ "G00048MO", "G00056MO", "Neo Lactosamine", "false" ], [ "G00048MO", "G00068MO", "Blood group H", "false" ], [ "G00049MO", "G00049MO", "Lewis C", "false" ], [ "G00049MO", "G00056MO", "Neo Lactosamine", "false" ], [ "G00049MO", "G00069MO", "Glycosphingolipid Lacto series", "true" ] ] }, "readme": "Name\n - Glycan Motif\n\nVersion\n - 1.5.30\n\nCreated on\n - 2019-11-13T13:05:37.256972\n\nModified on\n - 2020-05-01T15:01:42.751754\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Motif\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: allmotif.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/allmotif.tsv\n Output Subdomain\n Name: glycan_motif.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/glycan_motif.csv\n Name: glycan_motif.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/glycan_motif.stat.csv\n\nFields\n Name: \"is_reducing_end\"\n Description: \"Yes if the glycan is associated motif is in the reducing end of the glycan and no if the motif is not in the reducing end of the glycan.\"\n Unique Values: \"2\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"13567\"\n Name: \"glytoucan_ac_motif\"\n Description: \"GlyTouCan accession assigned to the motif associated with the glycan\"\n Unique Values: \"62\"\n Name: \"motif_name\"\n Description: \"Name of the motif associated with the glycan\"\n Unique Values: \"61\"", "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/glycan_motif.csv" }