{ "bcoid": "GLY_000282", "title": "Glycan Classification", "description": "The dataset provides information on the glycan classification such as glycan type and sub-type for the ...", "filename": "glycan_classification.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Classification", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00012RZ...", "N-glycan..." ], [ "G00025YC...", "N-glycan..." ] ], "headers": [ "glytoucan_ac...", "glycan_type..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glycan_type" }, { "type": "string", "label": "glycan_subtype" } ], [ "G00012RZ", "N-glycan", "complex" ], [ "G00025YC", "N-glycan", "complex" ], [ "G00026MO", "N-glycan", "paucimannose" ], [ "G00027JG", "O-glycan", "core 2" ], [ "G00028MO", "N-glycan", "high mannose" ], [ "G00029MO", "N-glycan", "hybrid" ], [ "G00030MO", "N-glycan", "complex" ], [ "G00031MO", "O-glycan", "core 1" ], [ "G00032MO", "O-glycan", "core 1" ], [ "G00033MO", "O-glycan", "core 2" ], [ "G00034MO", "O-glycan", "core 2" ], [ "G00035MO", "O-glycan", "core 3" ], [ "G00036MO", "O-glycan", "core 3" ], [ "G00037MO", "O-glycan", "core 4" ], [ "G00038MO", "O-glycan", "core 4" ], [ "G00039MO", "O-glycan", "core 5" ], [ "G00040MO", "O-glycan", "core 5" ], [ "G00041MO", "O-glycan", "core 6" ], [ "G00042MO", "O-glycan", "core 6" ], [ "G00043MO", "O-glycan", "core 7" ], [ "G00044MO", "O-glycan", "core 7" ], [ "G00063MO", "O-glycan", "core 1" ], [ "G00094SE", "O-glycan", "core 2" ], [ "G00155YT", "N-glycan", "complex" ], [ "G00167VE", "N-glycan", "complex" ], [ "G00171RJ", "N-glycan", "complex" ], [ "G00176HZ", "N-glycan", "complex" ], [ "G00186OS", "N-glycan", "complex" ], [ "G00211WY", "N-glycan", "complex" ], [ "G00219DO", "N-glycan", "complex" ], [ "G00221CZ", "N-glycan", "complex" ], [ "G00227RN", "N-glycan", "complex" ], [ "G00230CO", "N-glycan", "complex" ], [ "G00231IQ", "N-glycan", "" ], [ "G00231WL", "N-glycan", "complex" ], [ "G00247JV", "N-glycan", "" ], [ "G00247PL", "N-glycan", "hybrid" ], [ "G00249IY", "N-glycan", "" ], [ "G00279YF", "N-glycan", "complex" ], [ "G00281HB", "N-glycan", "" ], [ "G00318AV", "N-glycan", "" ], [ "G00320ZP", "N-glycan", "complex" ], [ "G00325UK", "N-glycan", "complex" ], [ "G00328CG", "N-glycan", "" ], [ "G00335DM", "N-glycan", "" ], [ "G00349CA", "N-glycan", "" ], [ "G00361YF", "N-glycan", "complex" ], [ "G00371DJ", "O-glycan", "core 3" ], [ "G00383KP", "N-glycan", "" ], [ "G00383YF", "N-glycan", "complex" ], [ "G00396IE", "N-glycan", "" ], [ "G00412SV", "N-glycan", "" ], [ "G00413UF", "N-glycan", "complex" ], [ "G00423TL", "O-glycan", "core 1" ], [ "G00430ZK", "O-glycan", "core 2" ], [ "G00432WV", "N-glycan", "complex" ], [ "G00433KW", "N-glycan", "" ], [ "G00438EF", "N-glycan", "complex" ], [ "G00451UT", "N-glycan", "complex" ], [ "G00463XD", "N-glycan", "complex" ], [ "G00468KU", "N-glycan", "" ], [ "G00468NI", "O-glycan", "core 2" ], [ "G00470UO", "N-glycan", "complex" ], [ "G00480KJ", "N-glycan", "complex" ], [ "G00487XO", "N-glycan", "" ], [ "G00492CQ", "N-glycan", "" ], [ "G00503EE", "N-glycan", "complex" ], [ "G00504PK", "N-glycan", "" ], [ "G00514XC", "N-glycan", "complex" ], [ "G00520NI", "O-glycan", "core 3" ], [ "G00523YW", "N-glycan", "complex" ], [ "G00531ZU", "N-glycan", "complex" ], [ "G00536FZ", "N-glycan", "complex" ], [ "G00545NQ", "N-glycan", "complex" ], [ "G00551JZ", "N-glycan", "" ], [ "G00553AN", "N-glycan", "" ], [ "G00565QJ", "N-glycan", "" ], [ "G00582VL", "N-glycan", "hybrid" ], [ "G00588HO", "N-glycan", "" ], [ "G00591PZ", "N-glycan", "complex" ], [ "G00594AV", "N-glycan", "" ], [ "G00598SQ", "N-glycan", "complex" ], [ "G00606LX", "N-glycan", "complex" ], [ "G00629YK", "N-glycan", "high mannose" ] ] }, "readme": "Name\n - Glycan Classification\n\nVersion\n - 1.5.30\n\nCreated on\n - 2019-11-13T12:59:46.920689\n\nModified on\n - 2020-05-01T15:01:17.670378\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan classification such as glycan type and sub-type for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Classification\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: classification.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/classification.tsv\n Output Subdomain\n Name: glycan_classification.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/glycan_classification.csv\n Name: glycan_classification.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/glycan_classification.stat.csv\n\nFields\n Name: \"glycan_type\"\n Description: \"Type of Glycan (N-Glycan\n Unique Values: \"2\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"9147\"\n Name: \"glycan_subtype\"\n Description: \"Subtype of the glycan e.g high mannose or complex or core 1 etc\"\n Unique Values: \"12\"", "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/glycan_classification.csv" }