{
    "bcoid": "GLY_000266",
    "title": "Rat UniProtKB Xref Bgee",
    "description": "The Rat UniProtKB Xref Bgee dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...",
    "filename": "rat_protein_xref_bgee.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Bgee cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q5RJK9-1...",
                "protein_xref..."
            ],
            [
                "Q5RJK8-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "Q5RJK9-1",
                "protein_xref_bgee",
                "ENSRNOG00000019079",
                "Expressed in 10 organ(s), highest expression level in heart"
            ],
            [
                "Q5RJK8-1",
                "protein_xref_bgee",
                "ENSRNOG00000003550",
                "Expressed in 10 organ(s), highest expression level in testis"
            ],
            [
                "D3ZG10-1",
                "protein_xref_bgee",
                "ENSRNOG00000018316",
                "Expressed in 9 organ(s), highest expression level in spleen"
            ],
            [
                "D3ZB44-1",
                "protein_xref_bgee",
                "ENSRNOG00000027436",
                "Expressed in 9 organ(s), highest expression level in liver"
            ],
            [
                "D3ZZY2-1",
                "protein_xref_bgee",
                "ENSRNOG00000005012",
                "Expressed in 9 organ(s), highest expression level in spleen"
            ],
            [
                "Q5RJK0-1",
                "protein_xref_bgee",
                "ENSRNOG00000053269",
                "Expressed in 10 organ(s), highest expression level in heart"
            ],
            [
                "Q5RJK3-1",
                "protein_xref_bgee",
                "ENSRNOG00000012454",
                "Expressed in 9 organ(s), highest expression level in colon"
            ],
            [
                "Q5RJK5-1",
                "protein_xref_bgee",
                "ENSRNOG00000011814",
                "Expressed in 10 organ(s), highest expression level in brain"
            ],
            [
                "D3ZB48-1",
                "protein_xref_bgee",
                "ENSRNOG00000026226",
                "Expressed in 9 organ(s), highest expression level in testis"
            ],
            [
                "Q5RJK6-1",
                "protein_xref_bgee",
                "ENSRNOG00000012375",
                "Expressed in 10 organ(s), highest expression level in lung"
            ],
            [
                "A0A096MKC6-1",
                "protein_xref_bgee",
                "ENSRNOG00000051227",
                "Expressed in 2 organ(s), highest expression level in liver"
            ],
            [
                "A0A0G2K0H3-1",
                "protein_xref_bgee",
                "ENSRNOG00000006338",
                "Expressed in 10 organ(s), highest expression level in liver"
            ],
            [
                "Q5XIH0-1",
                "protein_xref_bgee",
                "ENSRNOG00000013514",
                "Expressed in 10 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "Q6MG51-1",
                "protein_xref_bgee",
                "ENSRNOG00000039658",
                "Expressed in 10 organ(s), highest expression level in heart"
            ],
            [
                "F1M2W7-1",
                "protein_xref_bgee",
                "ENSRNOG00000017686",
                "Expressed in 8 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "Q6MG53-1",
                "protein_xref_bgee",
                "ENSRNOG00000027516",
                "Expressed in 8 organ(s), highest expression level in liver"
            ],
            [
                "D4AAV0-1",
                "protein_xref_bgee",
                "ENSRNOG00000005082",
                "Expressed in 9 organ(s), highest expression level in colon"
            ],
            [
                "Q6MG59-1",
                "protein_xref_bgee",
                "ENSRNOG00000026936",
                "Expressed in 9 organ(s), highest expression level in adult mammalian kidney"
            ],
            [
                "Q4KLP0-1",
                "protein_xref_bgee",
                "ENSRNOG00000023587",
                "Expressed in 10 organ(s), highest expression level in liver"
            ],
            [
                "M0RAP0-1",
                "protein_xref_bgee",
                "ENSRNOG00000045975",
                "Expressed in 8 organ(s), highest expression level in heart"
            ],
            [
                "M0RAP1-1",
                "protein_xref_bgee",
                "ENSRNOG00000050207",
                "Expressed in 1 organ(s), highest expression level in testis"
            ],
            [
                "M0RAP6-1",
                "protein_xref_bgee",
                "ENSRNOG00000014750",
                "Expressed in 9 organ(s), highest expression level in liver"
            ],
            [
                "A0A0G2JVG5-1",
                "protein_xref_bgee",
                "ENSRNOG00000030948",
                "Expressed in 2 organ(s), highest expression level in testis"
            ],
            [
                "A0A0G2JVG6-1",
                "protein_xref_bgee",
                "ENSRNOG00000053366",
                "Expressed in 9 organ(s), highest expression level in brain"
            ],
            [
                "M0RAP5-1",
                "protein_xref_bgee",
                "ENSRNOG00000008392",
                "Expressed in 10 organ(s), highest expression level in brain"
            ],
            [
                "F1M1W4-1",
                "protein_xref_bgee",
                "ENSRNOG00000024022",
                "Expressed in 9 organ(s), highest expression level in Ammon's horn"
            ],
            [
                "Q9WUD9-1",
                "protein_xref_bgee",
                "ENSRNOG00000009495",
                "Expressed in 10 organ(s), highest expression level in brain"
            ],
            [
                "M0R5G5-1",
                "protein_xref_bgee",
                "ENSRNOG00000045626",
                "Expressed in 5 organ(s), highest expression level in liver"
            ],
            [
                "Q925Q4-1",
                "protein_xref_bgee",
                "ENSRNOG00000021020",
                "Expressed in 7 organ(s), highest expression level in adult mammalian kidney"
            ],
            [
                "Q9QX69-1",
                "protein_xref_bgee",
                "ENSRNOG00000013557",
                "Expressed in 10 organ(s), highest expression level in testis"
            ],
            [
                "A0A0G2K1J7-1",
                "protein_xref_bgee",
                "ENSRNOG00000059424",
                "Expressed in 8 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "P30348-1",
                "protein_xref_bgee",
                "ENSRNOG00000002792",
                "Expressed in 5 organ(s), highest expression level in lung"
            ],
            [
                "D3ZLV0-1",
                "protein_xref_bgee",
                "ENSRNOG00000008003",
                "Expressed in 2 organ(s), highest expression level in testis"
            ],
            [
                "D3ZZY1-1",
                "protein_xref_bgee",
                "ENSRNOG00000034287",
                "Expressed in 9 organ(s), highest expression level in heart"
            ],
            [
                "D3ZLV5-1",
                "protein_xref_bgee",
                "ENSRNOG00000008005",
                "Expressed in 9 organ(s), highest expression level in spleen"
            ],
            [
                "A0A096MJY8-1",
                "protein_xref_bgee",
                "ENSRNOG00000013975",
                "Expressed in 9 organ(s), highest expression level in liver"
            ],
            [
                "Q8VHI8-1",
                "protein_xref_bgee",
                "ENSRNOG00000020753",
                "Expressed in 10 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "D3ZLV9-1",
                "protein_xref_bgee",
                "ENSRNOG00000007981",
                "Expressed in 9 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "A0A096MJY4-1",
                "protein_xref_bgee",
                "ENSRNOG00000033134",
                "Expressed in 10 organ(s), highest expression level in brain"
            ],
            [
                "O88181-1",
                "protein_xref_bgee",
                "ENSRNOG00000002117",
                "Expressed in 1 organ(s), highest expression level in brain"
            ],
            [
                "A0A096MJY1-1",
                "protein_xref_bgee",
                "ENSRNOG00000046660",
                "Expressed in 9 organ(s), highest expression level in heart"
            ],
            [
                "Q2KMM2-1",
                "protein_xref_bgee",
                "ENSRNOG00000037627",
                "Expressed in 10 organ(s), highest expression level in colon"
            ],
            [
                "Q2KN99-1",
                "protein_xref_bgee",
                "ENSRNOG00000001303",
                "Expressed in 10 organ(s), highest expression level in lung"
            ],
            [
                "A0A096MJY2-1",
                "protein_xref_bgee",
                "ENSRNOG00000011006",
                "Expressed in 4 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "D4A838-1",
                "protein_xref_bgee",
                "ENSRNOG00000046620",
                "Expressed in 1 organ(s), highest expression level in brain"
            ],
            [
                "Q5M808-1",
                "protein_xref_bgee",
                "ENSRNOG00000017383",
                "Expressed in 10 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "O55043-1",
                "protein_xref_bgee",
                "ENSRNOG00000012934",
                "Expressed in 10 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "A0A0G2K5R6-1",
                "protein_xref_bgee",
                "ENSRNOG00000052467",
                "Expressed in 8 organ(s), highest expression level in spleen"
            ],
            [
                "D4A830-1",
                "protein_xref_bgee",
                "ENSRNOG00000012091",
                "Expressed in 10 organ(s), highest expression level in adult mammalian kidney"
            ],
            [
                "D4A831-1",
                "protein_xref_bgee",
                "ENSRNOG00000012045",
                "Expressed in 3 organ(s), highest expression level in brain"
            ],
            [
                "D4A832-1",
                "protein_xref_bgee",
                "ENSRNOG00000061768",
                "Expressed in 9 organ(s), highest expression level in lung"
            ],
            [
                "D3ZZY5-1",
                "protein_xref_bgee",
                "ENSRNOG00000018710",
                "Expressed in 4 organ(s), highest expression level in liver"
            ],
            [
                "D4A834-1",
                "protein_xref_bgee",
                "ENSRNOG00000037908",
                "Expressed in 3 organ(s), highest expression level in spleen"
            ],
            [
                "M0R6T1-1",
                "protein_xref_bgee",
                "ENSRNOG00000047198",
                "Expressed in 10 organ(s), highest expression level in liver"
            ],
            [
                "A0A0G2JZ74-1",
                "protein_xref_bgee",
                "ENSRNOG00000059805",
                "Expressed in 8 organ(s), highest expression level in lung"
            ],
            [
                "B0JYS4-1",
                "protein_xref_bgee",
                "ENSRNOG00000016935",
                "Expressed in 10 organ(s), highest expression level in testis"
            ],
            [
                "A0A0G2K5R4-1",
                "protein_xref_bgee",
                "ENSRNOG00000053060",
                "Expressed in 10 organ(s), highest expression level in spleen"
            ],
            [
                "O54783-1",
                "protein_xref_bgee",
                "ENSRNOG00000011404",
                "Expressed in 9 organ(s), highest expression level in liver"
            ],
            [
                "Q6QI33-1",
                "protein_xref_bgee",
                "ENSRNOG00000033703",
                "Expressed in 3 organ(s), highest expression level in lung"
            ],
            [
                "M0RCZ9-1",
                "protein_xref_bgee",
                "ENSRNOG00000022492",
                "Expressed in 6 organ(s), highest expression level in spleen"
            ],
            [
                "M0RCZ7-1",
                "protein_xref_bgee",
                "ENSRNOG00000052229",
                "Expressed in 4 organ(s), highest expression level in spleen"
            ],
            [
                "M0RCZ2-1",
                "protein_xref_bgee",
                "ENSRNOG00000047401",
                "Expressed in 3 organ(s), highest expression level in testis"
            ],
            [
                "F1M2W3-1",
                "protein_xref_bgee",
                "ENSRNOG00000038274",
                "Expressed in 4 organ(s), highest expression level in spleen"
            ],
            [
                "P01946-1",
                "protein_xref_bgee",
                "ENSRNOG00000029886",
                "Expressed in 9 organ(s), highest expression level in spleen"
            ],
            [
                "P56571-1",
                "protein_xref_bgee",
                "ENSRNOG00000001211",
                "Expressed in 10 organ(s), highest expression level in heart"
            ],
            [
                "P56574-1",
                "protein_xref_bgee",
                "ENSRNOG00000013949",
                "Expressed in 10 organ(s), highest expression level in heart"
            ],
            [
                "Q5BK10-1",
                "protein_xref_bgee",
                "ENSRNOG00000032375",
                "Expressed in 7 organ(s), highest expression level in colon"
            ],
            [
                "M0R7U6-1",
                "protein_xref_bgee",
                "ENSRNOG00000048831",
                "Expressed in 9 organ(s), highest expression level in colon"
            ],
            [
                "Q6P7Q1-1",
                "protein_xref_bgee",
                "ENSRNOG00000004364",
                "Expressed in 10 organ(s), highest expression level in heart"
            ],
            [
                "M0R7U1-1",
                "protein_xref_bgee",
                "ENSRNOG00000046947",
                "Expressed in 5 organ(s), highest expression level in brain"
            ],
            [
                "Q6P7Q4-1",
                "protein_xref_bgee",
                "ENSRNOG00000000541",
                "Expressed in 9 organ(s), highest expression level in skeletal muscle tissue"
            ],
            [
                "F1M4Y5-1",
                "protein_xref_bgee",
                "ENSRNOG00000023712",
                "Expressed in 5 organ(s), highest expression level in testis"
            ],
            [
                "F7FL53-1",
                "protein_xref_bgee",
                "ENSRNOG00000008243",
                "Expressed in 9 organ(s), highest expression level in liver"
            ],
            [
                "Q6AY39-1",
                "protein_xref_bgee",
                "ENSRNOG00000012019",
                "Expressed in 9 organ(s), highest expression level in Ammon's horn"
            ],
            [
                "Q14U74-1",
                "protein_xref_bgee",
                "ENSRNOG00000012146",
                "Expressed in 9 organ(s), highest expression level in testis"
            ],
            [
                "Q5M807-1",
                "protein_xref_bgee",
                "ENSRNOG00000000438",
                "Expressed in 10 organ(s), highest expression level in adult mammalian kidney"
            ],
            [
                "P02767-1",
                "protein_xref_bgee",
                "ENSRNOG00000016275",
                "Expressed in 9 organ(s), highest expression level in liver"
            ],
            [
                "D3ZNX2-1",
                "protein_xref_bgee",
                "ENSRNOG00000060100",
                "Expressed in 9 organ(s), highest expression level in testis"
            ],
            [
                "D4A4W8-1",
                "protein_xref_bgee",
                "ENSRNOG00000012229",
                "Expressed in 4 organ(s), highest expression level in lung"
            ],
            [
                "D4A4W9-1",
                "protein_xref_bgee",
                "ENSRNOG00000038045",
                "Expressed in 9 organ(s), highest expression level in colon"
            ],
            [
                "D4A4W0-1",
                "protein_xref_bgee",
                "ENSRNOG00000048005",
                "Expressed in 1 organ(s), highest expression level in adult mammalian kidney"
            ],
            [
                "D4A4W1-1",
                "protein_xref_bgee",
                "ENSRNOG00000012369",
                "Expressed in 9 organ(s), highest expression level in lung"
            ],
            [
                "D4A4W2-1",
                "protein_xref_bgee",
                "ENSRNOG00000038055",
                "Expressed in 8 organ(s), highest expression level in testis"
            ],
            [
                "A0A0G2K2F3-1",
                "protein_xref_bgee",
                "ENSRNOG00000042473",
                "Expressed in 2 organ(s), highest expression level in lung"
            ]
        ]
    },
    "readme": "Name\n   - Rat UniProtKB Xref Bgee\n\nVersion\n   - 1.5.30\n\nCreated on\n  - 2019-09-06T14:06:38.992721\n\nModified on\n   - 2020-04-10T12:07:42.440257\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat UniProtKB Xref Bgee dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n   -  Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n   Keywords\n   - gene expression\n   - Bgee\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/source/uniprot-proteome-rattus-norvegicus.nt\n      Name: rat_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_masterlist.csv\n   Output Subdomain\n      Name: rat_protein_xref_bgee.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_xref_bgee.csv\n      Name: rat_protein_xref_bgee.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_xref_bgee.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"17085\"\n      Name: \"xref_label\"\n     Description: \"\"\n      Unique Values: \"99\"\n      Name: \"xref_id\"\n     Description: \"\"\n      Unique Values: \"17074\"\n      Name: \"xref_key\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.30/reviewed/rat_protein_xref_bgee.csv"
}