{
    "bcoid": "GLY_000454",
    "title": "SARS-CoV2 UniProtKB Xref Pfam",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref Pfam contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_xref_pfam.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "Pfam cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD1-1...",
                "PF01661..."
            ],
            [
                "P0DTD1-1...",
                "PF13604..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "database_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "database_id"
                },
                {
                    "type": "string",
                    "label": "database_label"
                }
            ],
            [
                "P0DTD1-1",
                "PF01661",
                "Macro"
            ],
            [
                "P0DTD1-1",
                "PF13604",
                "AAA_30"
            ],
            [
                "P0DTD1-1",
                "PF05409",
                "Peptidase_C30"
            ],
            [
                "P0DTD1-1",
                "PF06460",
                "NSP16"
            ],
            [
                "P0DTD1-1",
                "PF06471",
                "NSP11"
            ],
            [
                "P0DTD1-1",
                "PF06478",
                "Corona_RPol_N"
            ],
            [
                "P0DTD1-1",
                "PF08710",
                "nsp9"
            ],
            [
                "P0DTD1-1",
                "PF08715",
                "Viral_protease"
            ],
            [
                "P0DTD1-1",
                "PF08716",
                "nsp7"
            ],
            [
                "P0DTD1-1",
                "PF08717",
                "nsp8"
            ],
            [
                "P0DTD1-1",
                "PF09401",
                "NSP10"
            ],
            [
                "P0DTD1-1",
                "PF11501",
                "Nsp1"
            ],
            [
                "P0DTD1-1",
                "PF11633",
                "SUD-M"
            ],
            [
                "P0DTD1-1",
                "PF12124",
                "Nsp3_PL2pro"
            ],
            [
                "P0DTD1-1",
                "PF12379",
                "DUF3655"
            ],
            [
                "P0DTD1-1",
                "PF16251",
                "NAR"
            ],
            [
                "P0DTD1-1",
                "PF16348",
                "Corona_NSP4_C"
            ],
            [
                "P0DTC7-1",
                "PF08779",
                "SARS_X4"
            ],
            [
                "P0DTC6-1",
                "PF12133",
                "Sars6"
            ],
            [
                "P0DTC5-1",
                "PF01635",
                "Corona_M"
            ],
            [
                "P0DTC4-1",
                "PF02723",
                "NS3_envE"
            ],
            [
                "P0DTC3-1",
                "PF11289",
                "APA3_viroporin"
            ],
            [
                "P0DTC2-1",
                "PF01601",
                "Corona_S2"
            ],
            [
                "P0DTC2-1",
                "PF09408",
                "Spike_rec_bind"
            ],
            [
                "P0DTC9-1",
                "PF00937",
                "Corona_nucleoca"
            ],
            [
                "P0DTC8-1",
                "PF12093",
                "Corona_NS8"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 UniProtKB Xref Pfam\n\nVersion\n   - 1.5.27\n\nCreated on\n  - 2020-04-03T12:33:52.055648\n\nModified on\n   - 2020-04-10T12:30:41.344898\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) UniProtKB Xref Pfam contains sarscov2 [taxid:2697049] UniProtKB canonical accessions cross-referenced to Pfam database accessions/identifiers. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - Pfam is a database of protein families that includes their annotations and multiple sequence alignments generated using hidden Markov models.\n\nDescription Domain\n   Keywords\n   - protein family\n   - Pfam\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Pfam database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_xref_pfam.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_xref_pfam.csv\n      Name: sarscov2_protein_xref_pfam.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_xref_pfam.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"9\"\n      Name: \"database_label\"\n     Description: \"Label or name assigned to the corresponding identifier in the source database\"\n      Unique Values: \"26\"\n      Name: \"database_id\"\n     Description: \"Identifier in the database\"\n      Unique Values: \"26\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.27/reviewed/sarscov2_protein_xref_pfam.csv"
}