{
    "bcoid": "GLY_000496",
    "title": "SARS-CoV2 Protein Alternative Name (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Alternative Name (UniProtKB) dataset contains ...",
    "filename": "sarscov2_protein_altnames.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "Protein Alternative Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD2-1...",
                "Accessory pr..."
            ],
            [
                "P0DTD2-1...",
                "ORF-9b..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "alternative_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "alternative_name_full"
                },
                {
                    "type": "string",
                    "label": "alternative_name_short"
                },
                {
                    "type": "string",
                    "label": "ec_name"
                }
            ],
            [
                "P0DTD2-1",
                "Accessory protein 9b",
                "",
                ""
            ],
            [
                "P0DTD2-1",
                "ORF-9b",
                "",
                ""
            ],
            [
                "P0DTD1-1",
                "ORF1ab polyprotein",
                "",
                ""
            ],
            [
                "P0DTC7-1",
                "Protein U122",
                "",
                ""
            ],
            [
                "P0DTC7-1",
                "Protein X4",
                "",
                ""
            ],
            [
                "P0DTC7-1",
                "Accessory protein 7a",
                "",
                ""
            ],
            [
                "P0DTC6-1",
                "Accessory protein 6",
                "",
                ""
            ],
            [
                "P0DTC6-1",
                "Protein X3",
                "",
                ""
            ],
            [
                "P0DTC5-1",
                "Matrix glycoprotein",
                "",
                ""
            ],
            [
                "P0DTC5-1",
                "Membrane glycoprotein",
                "",
                ""
            ],
            [
                "P0DTC5-1",
                "E1 glycoprotein",
                "",
                ""
            ],
            [
                "P0DTC3-1",
                "Protein U274",
                "",
                ""
            ],
            [
                "P0DTC3-1",
                "Protein X1",
                "",
                ""
            ],
            [
                "P0DTC3-1",
                "Accessory protein 3a",
                "",
                ""
            ],
            [
                "P0DTC2-1",
                "E2",
                "",
                ""
            ],
            [
                "P0DTC2-1",
                "Peplomer protein",
                "",
                ""
            ],
            [
                "P0DTC1-1",
                "ORF1a polyprotein",
                "",
                ""
            ],
            [
                "P0DTD8-1",
                "Accessory protein 7b",
                "",
                ""
            ],
            [
                "P0DTC9-1",
                "Nucleocapsid protein",
                "NC",
                ""
            ],
            [
                "P0DTC9-1",
                "Nucleocapsid protein",
                "Protein N",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Alternative Name (UniProtKB)\n\nVersion\n   - 1.5.27\n\nCreated on\n  - 2020-05-07T18:25:16.830914\n\nModified on\n   - 2020-05-07T18:25:28.238809\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCoV) Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for sarscov2 [taxid:2697049] proteins. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein alternative name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.27/source/uniprot-proteome-sars-cov-2.nt\n      Name: sarscov2_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.27/reviewed/sarscov2_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov2_protein_altnames.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.27/reviewed/sarscov2_protein_altnames.csv\n      Name: sarscov2_protein_altnames.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.27/reviewed/sarscov2_protein_altnames.stat.csv\n\nFields\n      Name: \"alternative_name_short\"\n     Description: \"Alternative short name of the protein in UniProtKB database\"\n      Unique Values: \"3\"\n      Name: \"ec_name\"\n     Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"1\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"10\"\n      Name: \"alternative_name_full\"\n     Description: \"Alternative full name of the protein in the UniProtKB database\"\n      Unique Values: \"19\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.27/reviewed/sarscov2_protein_altnames.csv"
}