{ "bcoid": "GLY_000483", "title": "Human Proteoform Citations (GlyConnect)", "description": "The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ...", "filename": "human_proteoform_citations_glyconnect.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P14780-1...", "29741879..." ], [ "P19652-1...", "7240157..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" } ], [ "P14780-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "6" ], [ "P19652-1", "7240157", "Characterization of the microheterogeneity in glycoproteins by 500-MHz 1H-NMR spectroscopy of glycopeptide preparations. Application to a monofucosylated tetra-antennary glycopeptide fraction from human plasma alpha 1-acid glycoprotein.", "The Journal of biological chemistry", "1981 Jun 10", "van Halbeek H, Dorland L, Vliegenthart JF, Montreuil J, Fournet B, Schmid K", "protein_xref_glyconnect", "14" ], [ "P19652-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "14" ], [ "P19652-1", "19838169", "Enrichment of glycopeptides for glycan structure and attachment site identification.", "Nature methods", "2009 Nov", "Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G", "protein_xref_glyconnect", "14" ], [ "P19652-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "14" ], [ "P19652-1", "24530628", "Selective glycopeptide profiling by acetone enrichment and LC/MS.", "Journal of proteomics", "2014 Apr 14", "Takakura D, Harazono A, Hashii N, Kawasaki N", "protein_xref_glyconnect", "14" ], [ "P19652-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "14" ], [ "P01011-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "19" ], [ "P01011-1", "24279413", "Computational framework for identification of intact glycopeptides in complex samples.", "Analytical chemistry", "2014 Jan 7", "Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H", "protein_xref_glyconnect", "19" ], [ "P01011-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "19" ], [ "P01011-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "19" ], [ "P01011-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "19" ], [ "P01009-1", "19838169", "Enrichment of glycopeptides for glycan structure and attachment site identification.", "Nature methods", "2009 Nov", "Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G", "protein_xref_glyconnect", "20" ], [ "P01009-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "20" ], [ "P01009-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "20" ], [ "P01009-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "20" ], [ "P01009-1", "24279413", "Computational framework for identification of intact glycopeptides in complex samples.", "Analytical chemistry", "2014 Jan 7", "Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H", "protein_xref_glyconnect", "20" ], [ "P01009-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "20" ], [ "P02760-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "21" ], [ "P02760-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "21" ], [ "P02760-1", "1694784", "Location and characterization of the three carbohydrate prosthetic groups of human protein HC.", "FEBS letters", "1990 Jun 18", "Escribano J, Lopex-Otin C, Hjerpe A, Grubb A, Mendez E", "protein_xref_glyconnect", "21" ], [ "P02765-1", "19838169", "Enrichment of glycopeptides for glycan structure and attachment site identification.", "Nature methods", "2009 Nov", "Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G", "protein_xref_glyconnect", "23" ], [ "P02765-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "23" ], [ "P02765-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "23" ], [ "P02765-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "23" ], [ "P02765-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "23" ], [ "P02765-1", "24417605", "Glycomic analysis of high density lipoprotein shows a highly sialylated particle.", "Journal of proteome research", "2014 Feb 7", "Huang J, Lee H, Zivkovic AM, Smilowitz JT, Rivera N, German JB, Lebrilla CB", "protein_xref_glyconnect", "23" ], [ "P02765-1", "1457416", "Structure of the N- and O-glycans of the A-chain of human plasma alpha 2HS-glycoprotein as deduced from the chemical compositions of the derivatives prepared by stepwise degradation with exoglycosidases.", "Biochemistry", "1992 Dec 8", "Watzlawick H, Walsh MT, Yoshioka Y, Schmid K, Brossmer R", "protein_xref_glyconnect", "23" ], [ "P02765-1", "6833285", "Characterization of the B-chain of human plasma alpha 2HS-glycoprotein. The complete amino acid sequence and primary structure of its heteroglycan.", "The Journal of biological chemistry", "1983 Apr 25", "Gejyo F, Chang JL, Burgi W, Schmid K, Offner GD, Troxler RF, Van Halbeek H, Dorland L, Gerwig GJ, Vliegenthart JF", "protein_xref_glyconnect", "23" ], [ "P02771-1", "7511099", "Characterization of E-PHA-reactive alpha-fetoprotein isoforms by two-dimensional lectin affinity electrophoresis.", "Electrophoresis", "1993 Dec", "Taketa K, Fujii Y, Taga H", "protein_xref_glyconnect", "41" ], [ "P02771-1", "7686446", "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "Cancer research", "1993 Jul 1", "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "protein_xref_glyconnect", "41" ], [ "P02771-1", "6192908", "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "Cancer research", "1983 Oct", "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "protein_xref_glyconnect", "41" ], [ "P17050-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "45" ], [ "P08519-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "56" ], [ "P04114-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "57" ], [ "P04114-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "57" ], [ "P04114-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "57" ], [ "P02656-1", "208636", "Characterization of the oligosaccharide side chain of apolipoprotein C-III from human plasma very low density lipoproteins.", "Biochimica et biophysica acta", "1978 Jun 15", "Vaith P, Assmann G, Uhlenbruck G", "protein_xref_glyconnect", "58" ], [ "P02656-1", "24417605", "Glycomic analysis of high density lipoprotein shows a highly sialylated particle.", "Journal of proteome research", "2014 Feb 7", "Huang J, Lee H, Zivkovic AM, Smilowitz JT, Rivera N, German JB, Lebrilla CB", "protein_xref_glyconnect", "58" ], [ "P19835-1", "10024660", "Structural characterization of the N-linked oligosaccharides in bile salt-stimulated lipase originated from human breast milk.", "Glycobiology", "1999 Mar", "Mechref Y, Chen P, Novotny MV", "protein_xref_glyconnect", "74" ], [ "P13987-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "79" ], [ "P13987-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "79" ], [ "P00450-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "85" ], [ "P00450-1", "19838169", "Enrichment of glycopeptides for glycan structure and attachment site identification.", "Nature methods", "2009 Nov", "Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G", "protein_xref_glyconnect", "85" ], [ "P00450-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "85" ], [ "P00450-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "85" ], [ "P00450-1", "24279413", "Computational framework for identification of intact glycopeptides in complex samples.", "Analytical chemistry", "2014 Jan 7", "Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H", "protein_xref_glyconnect", "85" ], [ "P00450-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "85" ], [ "P0DN86-1", "1820200", "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "Glycobiology", "1991 Sep", "Weisshaar G, Hiyama J, Renwick AG", "protein_xref_glyconnect", "91" ], [ "P10645-1", "9852066", "Phosphorylation and O-glycosylation sites of human chromogranin A (CGA79-439) from urine of patients with carcinoid tumors.", "The Journal of biological chemistry", "1998 Dec 18", "Gadroy P, Stridsberg M, Capon C, Michalski JC, Strub JM, Van Dorsselaer A, Aunis D, Metz-Boutigue MH", "protein_xref_glyconnect", "93" ], [ "P00740-1", "25456591", "Identification of protein O-glycosylation site and corresponding glycans using liquid chromatography-tandem mass spectrometry via mapping accurate mass and retention time shift.", "Journal of chromatography. A", "2014 Dec 5", "Huang LJ, Lin JH, Tsai JH, Chu YY, Chen YW, Chen SL, Chen SH", "protein_xref_glyconnect", "96" ], [ "P00740-1", "8329384", "Identification and structural analysis of the tetrasaccharide NeuAc alpha(2-->6)Gal beta(1-->4)GlcNAc beta(1-->3)Fuc alpha 1-->O-linked to serine 61 of human factor IX.", "Biochemistry", "1993 Jul 6", "Harris RJ, van Halbeek H, Glushka J, Basa LJ, Ling VT, Smith KJ, Spellman MW", "protein_xref_glyconnect", "96" ], [ "P00740-1", "2511201", "Identification of a disaccharide (Xyl-Glc) and a trisaccharide (Xyl2-Glc) O-glycosidically linked to a serine residue in the first epidermal growth factor-like domain of human factors VII and IX and protein Z and bovine protein Z.", "The Journal of biological chemistry", "1989 Dec 5", "Nishimura H, Kawabata S, Kisiel W, Hase S, Ikenaka T, Takao T, Shimonishi Y, Iwanaga S", "protein_xref_glyconnect", "96" ], [ "P08709-1", "1904059", "Human plasma and recombinant factor VII. Characterization of O-glycosylations at serine residues 52 and 60 and effects of site-directed mutagenesis of serine 52 to alanine.", "The Journal of biological chemistry", "1991 Jun 15", "Bjoern S, Foster DC, Thim L, Wiberg FC, Christensen M, Komiyama Y, Pedersen AH, Kisiel W", "protein_xref_glyconnect", "98" ], [ "P08709-1", "2511201", "Identification of a disaccharide (Xyl-Glc) and a trisaccharide (Xyl2-Glc) O-glycosidically linked to a serine residue in the first epidermal growth factor-like domain of human factors VII and IX and protein Z and bovine protein Z.", "The Journal of biological chemistry", "1989 Dec 5", "Nishimura H, Kawabata S, Kisiel W, Hase S, Ikenaka T, Takao T, Shimonishi Y, Iwanaga S", "protein_xref_glyconnect", "98" ], [ "P00451-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "99" ], [ "P00742-1", "7620335", "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "Glycoconjugate journal", "1995 Apr", "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "protein_xref_glyconnect", "102" ], [ "P01024-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "110" ], [ "P01024-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "110" ], [ "P01024-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "110" ], [ "P01024-1", "24279413", "Computational framework for identification of intact glycopeptides in complex samples.", "Analytical chemistry", "2014 Jan 7", "Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H", "protein_xref_glyconnect", "110" ], [ "P08861-1", "1898343", "Carbohydrate structure of human pancreatic elastase 1.", "The Biochemical journal", "1991 Sep 1", "Wendorf P, Linder D, Sziegoleit A, Geyer R", "protein_xref_glyconnect", "125" ], [ "P00533-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "137" ], [ "P00533-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "137" ], [ "P00533-1", "10731668", "Characterization of the N-oligosaccharides attached to the atypical Asn-X-Cys sequence of recombinant human epidermal growth factor receptor.", "Journal of biochemistry", "2000 Jan", "Sato C, Kim JH, Abe Y, Saito K, Yokoyama S, Kohda D", "protein_xref_glyconnect", "137" ], [ "P01588-1", "10764840", "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "Glycobiology", "2000 May", "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "protein_xref_glyconnect", "140" ], [ "P01588-1", "7781780", "Identification and structural characterization of a mannose-6-phosphate containing oligomannosidic N-glycan from human erythropoietin secreted by recombinant BHK-21 cells.", "FEBS letters", "1995 May 29", "Nimtz M, Wray V, Rudiger A, Conradt HS", "protein_xref_glyconnect", "140" ], [ "P01588-1", "22678432", "Determination of site-specific glycan heterogeneity on glycoproteins.", "Nature protocols", "2012 Jun 7", "Kolarich D, Jensen PH, Altmann F, Packer NH", "protein_xref_glyconnect", "142" ], [ "P02675-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "159" ], [ "P02675-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "159" ], [ "P02679-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "160" ], [ "P02679-1", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "160" ], [ "P02679-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "160" ], [ "P02751-15", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "161" ], [ "P02751-15", "24279413", "Computational framework for identification of intact glycopeptides in complex samples.", "Analytical chemistry", "2014 Jan 7", "Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H", "protein_xref_glyconnect", "161" ], [ "P02751-15", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "protein_xref_glyconnect", "161" ], [ "P02751-15", "30237853", "Distinct urinary glycoprotein signatures in prostate cancer patients.", "Oncotarget", "2018 Sep 4", "Kawahara R, Ortega F, Rosa-Fernandes L, Guimaraes V, Quina D, Nahas W, Schwammle V, Srougi M, Leite KRM, Thaysen-Andersen M, Larsen MR, Palmisano G", "protein_xref_glyconnect", "161" ], [ "P07359-1", "29391424", "Large-scale intact glycopeptide identification by Mascot database search.", "Scientific reports", "2018 Feb 1", "Bollineni RC, Koehler CJ, Gislefoss RE, Anonsen JH, Thiede B", "protein_xref_glyconnect", "176" ], [ "P09466-1", "7592613", "Structural analysis of the oligosaccharides derived from glycodelin, a human glycoprotein with potent immunosuppressive and contraceptive activities.", "The Journal of biological chemistry", "1995 Oct 13", "Dell A, Morris HR, Easton RL, Panico M, Patankar M, Oehniger S, Koistinen R, Koistinen H, Seppala M, Clark GF", "protein_xref_glyconnect", "177" ], [ "P01215-1", "1991473", "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "European journal of biochemistry", "1991 Jan 1", "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "protein_xref_glyconnect", "194" ], [ "P01215-1", "1820200", "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "Glycobiology", "1991 Sep", "Weisshaar G, Hiyama J, Renwick AG", "protein_xref_glyconnect", "194" ], [ "P01215-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H", "protein_xref_glyconnect", "194" ], [ "P14210-1", "8407880", "Structural study of the N-linked oligosaccharides of hepatocyte growth factor by two-dimensional sugar mapping.", "Journal of biochemistry", "1993 Jul", "Hara H, Nakae Y, Sogabe T, Ihara I, Ueno S, Sakai H, Inoue H, Shimizu S, Nakamura T, Shimizu N", "protein_xref_glyconnect", "219" ], [ "P14210-1", "1482348", "Hepatocyte growth factor is linked by O-glycosylated oligosaccharide on the alpha chain.", "Biochemical and biophysical research communications", "1992 Dec 30", "Shimizu N, Hara H, Sogabe T, Sakai H, Ihara I, Inoue H, Nakamura T, Shimizu S", "protein_xref_glyconnect", "219" ] ] }, "readme": "Name\n - Human Proteoform Citations (GlyConnect)\n\nVersion\n - 1.5.27\n\nCreated on\n - 2020-04-28T10:49:06.505148\n\nModified on\n - 2020-04-28T11:15:58.774004\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The Human Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000329. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.27/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Output Subdomain\n Name: human_proteoform_citations_glyconnect.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.27/reviewed/human_proteoform_citations_glyconnect.csv\n Name: human_proteoform_citations_glyconnect.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.27/reviewed/human_proteoform_citations_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"1095\"\n Name: \"xref_id\"\n Description: \"\"\n Unique Values: \"1098\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"78\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"28\"\n Name: \"authors\"\n Description: \"Authors of the associated publications\"\n Unique Values: \"78\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"71\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"78\"\n Name: \"xref_key\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.5.27/reviewed/human_proteoform_citations_glyconnect.csv" }