{
    "bcoid": "GLY_000433",
    "title": "SARS-CoV2 Protein Information (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Information dataset contains sarscov2 [taxid:2697049] ...",
    "filename": "sarscov2_protein_info_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "Protein Information",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD2-1...",
                "ORF9B_WCPV..."
            ],
            [
                "P0DTD1-1...",
                "R1AB_WCPV..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uniprotkb_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_mass"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_length"
                }
            ],
            [
                "P0DTD2-1",
                "ORF9B_WCPV",
                "10797",
                "97"
            ],
            [
                "P0DTD1-1",
                "R1AB_WCPV",
                "794058",
                "7096"
            ],
            [
                "A0A663DJA2-1",
                "A0A663DJA2_9BETC",
                "4449",
                "38"
            ],
            [
                "P0DTD3-1",
                "Y14_WCPV",
                "8050",
                "73"
            ],
            [
                "P0DTC7-1",
                "NS7A_WCPV",
                "13744",
                "121"
            ],
            [
                "P0DTC6-1",
                "NS6_WCPV",
                "7273",
                "61"
            ],
            [
                "P0DTC5-1",
                "VME1_WCPV",
                "25147",
                "222"
            ],
            [
                "P0DTC4-1",
                "VEMP_WCPV",
                "8365",
                "75"
            ],
            [
                "P0DTC3-1",
                "AP3A_WCPV",
                "31123",
                "275"
            ],
            [
                "P0DTC2-1",
                "SPIKE_WCPV",
                "141178",
                "1273"
            ],
            [
                "P0DTC1-1",
                "R1A_WCPV",
                "489989",
                "4405"
            ],
            [
                "P0DTD8-1",
                "NS7B_WCPV",
                "5180",
                "43"
            ],
            [
                "P0DTC9-1",
                "NCAP_WCPV",
                "45626",
                "419"
            ],
            [
                "P0DTC8-1",
                "NS8_WCPV",
                "13831",
                "121"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Protein Information (UniProtKB)\n\nVersion\n   - 1.5.23\n\nCreated on\n  - 2020-04-03T11:46:41.584409\n\nModified on\n   - 2020-04-10T12:26:50.433523\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Protein Information dataset contains sarscov2 [taxid:2697049] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - UniProtKB entry id\n   - UniProtKB mnemonic name\n   - protein length\n   - protein mass\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-sars-cov-2.nt\n      Name: sarscov2_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov2_protein_info_uniprotkb.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_info_uniprotkb.csv\n      Name: sarscov2_protein_info_uniprotkb.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/sarscov2_protein_info_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_protein_length\"\n     Description: \"Length of the protein sequence\"\n      Unique Values: \"13\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"14\"\n      Name: \"uniprotkb_protein_mass\"\n     Description: \"Molecular Mass of the protein in Daltons (Da)\"\n      Unique Values: \"14\"\n      Name: \"uniprotkb_id\"\n     Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n      Unique Values: \"14\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/sarscov2_protein_info_uniprotkb.csv"
}