{ "bcoid": "GLY_000222", "title": "Rat Protein Recommended Names (UniProtKB)", "description": "The Rat Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for rat [taxid:10116] ...", "filename": "rat_protein_recnames.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Recommended Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5RJK8-1...", "Acyl-CoA-bin..." ], [ "Q5RJK0-1...", "Transmembran..." ] ], "headers": [ "uniprotkb_ca...", "recommended_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "recommended_name_full" }, { "type": "string", "label": "recommended_name_short" }, { "type": "string", "label": "ec_name" } ], [ "Q5RJK8-1", "Acyl-CoA-binding domain-containing protein 6", "", "" ], [ "Q5RJK0-1", "Transmembrane protein 106C", "", "" ], [ "Q5RJK3-1", "tRNA methyltransferase 10 homolog B", "", "2.1.1.221" ], [ "P30349-1", "Leukotriene A-4 hydrolase", "LTA-4 hydrolase", "3.3.2.6" ], [ "A0A096MKC6-1", "Lipocln_cytosolic_FA-bd_dom domain-containing protein", "", "" ], [ "Q6MG55-1", "Phosphatidylserine lipase ABHD16A", "", "3.1.-.-" ], [ "Q6MG56-1", "Lymphocyte antigen 6 complex locus protein G6f", "", "" ], [ "A0A0G2K0H3-1", "Low-density lipoprotein receptor-related protein", "", "" ], [ "Q5XIH0-1", "Repressor of RNA polymerase III transcription MAF1 homolog", "", "" ], [ "Q6MG51-1", "Uncharacterized protein C6orf47 homolog", "", "" ], [ "Q6MG53-1", "Lymphocyte antigen 6 complex locus protein G5b", "", "" ], [ "P20961-1", "Plasminogen activator inhibitor 1", "PAI", "" ], [ "P20961-1", "Plasminogen activator inhibitor 1", "PAI-1", "" ], [ "Q6MG59-1", "Megakaryocyte and platelet inhibitory receptor G6b", "", "" ], [ "P01805-1", "Ig heavy chain V region IR2", "", "" ], [ "Q4KLP0-1", "Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial", "", "1.2.4.2" ], [ "A0A0G2JVG8-1", "Olfactory receptor", "", "" ], [ "P34997-1", "C-X-C chemokine receptor type 5", "CXC-R5", "" ], [ "P34997-1", "C-X-C chemokine receptor type 5", "CXCR-5", "" ], [ "Q9WUD9-1", "Proto-oncogene tyrosine-protein kinase Src", "", "2.7.10.2" ], [ "Q8R553-1", "Calsyntenin-3", "", "" ], [ "Q925Q4-1", "Glycoprotein hormone alpha-2", "", "" ], [ "Q9QX69-1", "Glutathione S-transferase LANCL1", "", "2.5.1.18" ], [ "P30348-1", "C-X-C motif chemokine 2", "", "" ], [ "Q9WUD2-1", "Transient receptor potential cation channel subfamily V member 2", "TrpV2", "" ], [ "A0A0G2JUK9-1", "Olfactory receptor", "", "" ], [ "D3ZLV0-1", "Olfactory receptor", "", "" ], [ "Q07969-1", "Platelet glycoprotein 4", "", "" ], [ "Q8VHI8-1", "Vesicle transport protein SEC20", "", "" ], [ "A0A096MJY4-1", "Myocyte-specific enhancer factor 2C", "", "" ], [ "O88181-1", "BarH-like 2 homeobox protein", "", "" ], [ "Q2KMM2-1", "Trafficking protein particle complex subunit 1", "", "" ], [ "Q2KN99-1", "Cytospin-A", "", "" ], [ "D4A838-1", "Olfactory receptor", "", "" ], [ "Q5M808-1", "Protein Hikeshi", "", "" ], [ "D3ZKU2-1", "Olfactory receptor", "", "" ], [ "O55043-1", "Rho guanine nucleotide exchange factor 7", "", "" ], [ "O54783-1", "Choline/ethanolamine kinase", "", "" ], [ "M0RCZ9-1", "Peptidyl-prolyl cis-trans isomerase", "PPIase", "5.2.1.8" ], [ "F1M2W3-1", "Ig-like domain-containing protein", "", "" ], [ "P01946-1", "Hemoglobin subunit alpha-1/2", "", "" ], [ "M0RCZ1-1", "Olfactory receptor", "", "" ], [ "P56571-1", "ES1 protein homolog, mitochondrial", "", "" ], [ "P20646-1", "Prostatic acid phosphatase", "", "3.1.3.2" ], [ "P56573-1", "Unknown protein from spot P5 of 2D-PAGE of heart tissue", "", "" ], [ "P56572-1", "Unknown protein from spot P3 of 2D-PAGE of heart tissue", "", "" ], [ "P56575-1", "Unknown protein from spot P9 of 2D-PAGE of heart tissue", "", "" ], [ "P56574-1", "Isocitrate dehydrogenase [NADP], mitochondrial", "IDH", "1.1.1.42" ], [ "Q5BK10-1", "Calpain-13", "", "3.4.22.-" ], [ "O35152-1", "BET1-like protein", "", "" ], [ "P48965-1", "M-phase inducer phosphatase 1", "", "3.1.3.48" ], [ "Q6P7Q1-1", "BRISC and BRCA1-A complex member 2", "", "" ], [ "P48966-1", "M-phase inducer phosphatase 2", "", "3.1.3.48" ], [ "P48961-1", "G1/S-specific cyclin-D3", "", "" ], [ "O35158-1", "Cell adhesion molecule-related/down-regulated by oncogenes", "", "" ], [ "Q6P7Q4-1", "Lactoylglutathione lyase", "", "4.4.1.5" ], [ "Q6AY39-1", "UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1", "Beta-1,3-GalNAc-T1", "2.4.1.79" ], [ "Q5M807-1", "E3 ubiquitin-protein ligase RNF5", "", "2.3.2.27" ], [ "Q9QYH1-1", "MAGUK p55 subfamily member 4", "", "" ], [ "P02764-1", "Alpha-1-acid glycoprotein", "", "" ], [ "P02767-1", "Transthyretin", "", "" ], [ "Q6AYD2-1", "CST complex subunit STN1", "", "" ], [ "D4A4W0-1", "Olfactory receptor", "", "" ], [ "D4A4W2-1", "Multidrug and toxin extrusion protein", "", "" ], [ "D4A4W5-1", "Phospholipid-transporting ATPase", "", "7.6.2.1" ], [ "A0A0G2JZN1-1", "Ig-like domain-containing protein", "", "" ], [ "A0A0G2JZN0-1", "Left-right determination factor", "", "" ], [ "D4ABH8-1", "Olfactory receptor", "", "" ], [ "Q6MG58-1", "Lymphocyte antigen 6 complex locus protein G6d", "", "" ], [ "P43219-1", "Gastric inhibitory polypeptide receptor", "GIP-R", "" ], [ "Q561K4-1", "Coiled-coil domain-containing protein 32", "", "" ], [ "P63076-1", "Fibroblast growth factor 17", "FGF-17", "" ], [ "M0R9X7-1", "Olfactory receptor", "", "" ], [ "Q8CF82-1", "ATP-binding cassette sub-family A member 5", "", "" ], [ "P39020-1", "Homeobox protein MOX-2", "", "" ], [ "D3ZVN8-1", "F-actin-capping protein subunit alpha", "", "" ], [ "Q2VWP9-1", "Protogenin", "", "" ], [ "Q6AY34-1", "Protein odd-skipped-related 2", "", "" ], [ "M0RBX0-1", "Olfactory receptor", "", "" ], [ "M0RBX3-1", "Ig-like domain-containing protein", "", "" ], [ "M0RBX4-1", "KRAB-related domain-containing protein", "", "" ], [ "P83858-1", "Pyroglutamylated RF-amide peptide receptor", "", "" ], [ "P62804-1", "Histone H4", "", "" ], [ "P20814-1", "Cytochrome P450 2C13, male-specific", "", "1.14.14.1" ] ] }, "readme": "Name\n - Rat Protein Recommended Names (UniProtKB)\n\nVersion\n - 1.5.23\n\nCreated on\n - 2019-09-06T14:06:38.950487\n\nModified on\n - 2020-04-10T11:52:06.379367\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for rat [taxid:10116] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein recommended name\n - protein name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_protein_recnames.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_recnames.csv\n Name: rat_protein_recnames.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_recnames.stat.csv\n\nFields\n Name: \"recommended_name_short\"\n Description: \"Recommended short name of the protein in UniProtKB database\"\n Unique Values: \"2906\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"1030\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"11307\"\n Name: \"recommended_name_full\"\n Description: \"Recommended full name of the protein in the UniProtKB database\"\n Unique Values: \"8842\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/rat_protein_recnames.csv" }