{ "bcoid": "GLY_000138", "title": "Human Proteoform Citations (UniCarbKB)", "description": "The Human Proteoform Citations (UniCarbKB) contains human [taxid:9606] publication information of glycoproteins ...", "filename": "human_proteoform_citations_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P07498-1...", "3342257..." ], [ "Q8WWV6-1...", "30459171..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "P07498-1", "3342257", "Chemical structure of neutral sugar chains isolated from human mature milk kappa-casein.", "Biochimica et biophysica acta", "1988 Feb 17", "Saito T, Itoh T, Adachi S" ], [ "Q8WWV6-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "Q9NQ40-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P00747-1", "2065054", "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "Biochemistry", "1991 Jul 9", "Davidson DJ, Castellino FJ" ], [ "P07911-1", "9884403", "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "Glycobiology", "1999 Jan", "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF" ], [ "Q6UXB8-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P01861-1", "24841998", "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "Proteomics", "2014 Aug", "Kontro H, Joenvaara S, Haglund C, Renkonen R" ], [ "P25311-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P16112-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P02724-1", "4091823", "Comparative study of glycophorin A derived O-glycans from human Cad, Sd(a+) and Sd(a-) erythrocytes.", "The Biochemical journal", "1985 Dec 15", "Blanchard D, Capon C, Leroy Y, Cartron JP, Fournet B" ], [ "P04278-1", "6684483", "Study of the carbohydrate moiety of human serum sex hormone-binding globulin.", "Biochimica et biophysica acta", "1983 Oct 4", "Avvakumov GV, Matveentseva IV, Akhrem LV, Strel'chyonok OA, Akhrem AA" ], [ "P00747-1", "1899031", "Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line.", "Biochemistry", "1991 Jan 22", "Davidson DJ, Castellino FJ" ], [ "P78509-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "Q92673-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P00742-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P08603-1", "17591618", "Site-specific N-glycan characterization of human complement factor H.", "Glycobiology", "2007 Sep", "Fenaille F, Le Mignon M, Groseil C, Ramon C, Riande S, Siret L, Bihoreau N" ], [ "P01588-1", "8477709", "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "European journal of biochemistry", "1993 Apr 1", "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS" ], [ "P01730-1", "2592374", "Protein and carbohydrate structural analysis of a recombinant soluble CD4 receptor by mass spectrometry.", "The Journal of biological chemistry", "1989 Dec 15", "Carr SA, Hemling ME, Folena-Wasserman G, Sweet RW, Anumula K, Barr JR, Huddleston MJ, Taylor P" ], [ "P08861-1", "1898343", "Carbohydrate structure of human pancreatic elastase 1.", "The Biochemical journal", "1991 Sep 1", "Wendorf P, Linder D, Sziegoleit A, Geyer R" ], [ "P08519-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P01588-1", "3179269", "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "Biochemistry", "1988 Jul 26", "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al." ], [ "P01588-1", "11805077", "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "Glycobiology", "2001 Dec", "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T" ], [ "Q05707-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "Q4LDE5-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P08709-1", "18642129", "Mass spectrometric characterization of N- and O-glycans of plasma-derived coagulation factor VII.", "Glycoconjugate journal", "2008 Dec", "Fenaille F, Groseil C, Ramon C, Riande S, Siret L, Chtourou S, Bihoreau N" ], [ "P00734-1", "7309709", "Studies on the structures of the carbohydrate moiety of human prothrombin.", "Journal of biochemistry", "1981 Oct", "Mizuochi T, Fujii J, Kisiel W, Kobata A" ], [ "P01215-1", "9449027", "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "Endocrine", "1997 Aug", "Elliott MM, Kardana A, Lustbader JW, Cole LA" ], [ "P16150-1", "2943741", "Structural variations of O-linked oligosaccharides present in leukosialin isolated from erythroid, myeloid, and T-lymphoid cell lines.", "The Journal of biological chemistry", "1986 Sep 25", "Carlsson SR, Sasaki H, Fukuda M" ], [ "P02771-1", "1694115", "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "Clinical chemistry", "1990 Jun", "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL" ], [ "Q14766-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P01588-1", "8460945", "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "Archives of biochemistry and biophysics", "1993 Mar", "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A" ], [ "P01215-1", "1820200", "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "Glycobiology", "1991 Sep", "Weisshaar G, Hiyama J, Renwick AG" ], [ "Q14624-1", "24884609", "Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4.", "Journal of proteome research", "2014 Jul 3", "Chandler KB, Brnakova Z, Sanda M, Wang S, Stalnaker SH, Bridger R, Zhao P, Wells L, Edwards NJ, Goldman R" ], [ "P02724-1", "7430095", "Structures of the asparagine-linked sugar chains of glycophorin A.", "The Journal of biological chemistry", "1980 Oct 25", "Yoshima H, Furthmayr H, Kobata A" ], [ "P04275-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "P02786-1", "2403553", "Human transferrin receptor contains O-linked oligosaccharides.", "The Journal of biological chemistry", "1990 Jan 5", "Do SI, Enns C, Cummings RD" ], [ "O94905-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "Q9UFP1-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P07911-1", "2136357", "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "Glycoconjugate journal", "1990", "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP" ], [ "P01876-1", "24841998", "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "Proteomics", "2014 Aug", "Kontro H, Joenvaara S, Haglund C, Renkonen R" ], [ "P11279-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P08603-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "P11279-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "Q5H9R7-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "P02679-1", "7107587", "Carbohydrate structure of human fibrinogen. Use of 300-MHz 1H-NMR to characterize glycosidase-treated glycopeptides.", "The Journal of biological chemistry", "1982 Aug 25", "Townsend RR, Hilliker E, Li YT, Laine RA, Bell WR, Lee YC" ], [ "P04114-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P16150-1", "2033371", "Altered O-glycan synthesis in lymphocytes from patients with Wiskott-Aldrich syndrome.", "The Journal of experimental medicine", "1991 Jun 1", "Piller F, Le Deist F, Weinberg KI, Parkman R, Fukuda M" ], [ "Q92876-1", "19088065", "Differential N-glycosylation of kallikrein 6 derived from ovarian cancer cells or the central nervous system.", "Molecular & cellular proteomics : MCP", "2009 Apr", "Kuzmanov U, Jiang N, Smith CR, Soosaipillai A, Diamandis EP" ], [ "Q9ULI3-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P03952-1", "24279413", "Computational framework for identification of intact glycopeptides in complex samples.", "Analytical chemistry", "2014 Jan 7", "Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H" ], [ "P25311-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "Q9Y5L3-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P01215-1", "1457969", "The asparagine-linked oligosaccharides at individual glycosylation sites in human thyrotrophin.", "Glycobiology", "1992 Oct", "Hiyama J, Weisshaar G, Renwick AG" ], [ "P07288-1", "25327667", "Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS.", "Journal of proteome research", "2014 Dec 5", "Song E, Mayampurath A, Yu CY, Tang H, Mechref Y" ], [ "P04114-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "P02771-1", "7679920", "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "British journal of cancer", "1993 Mar", "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H" ], [ "P39060-3", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P28300-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "O00220-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P36955-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P10646-1", "1388166", "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "The Journal of biological chemistry", "1992 Sep 25", "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU" ], [ "P00750-1", "8687384", "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "The Biochemical journal", "1996 Jun 1", "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE" ], [ "P02771-1", "6192908", "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "Cancer research", "1983 Oct", "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A" ], [ "P01588-1", "2550193", "Recombinant human erythropoietin produced by Namalwa cells.", "DNA (Mary Ann Liebert, Inc.)", "1989 Jul-Aug", "Yanagi H, Yoshima T, Ogawa I, Okamoto M" ], [ "P05156-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "P41222-1", "7525874", "Carbohydrate structures of beta-trace protein from human cerebrospinal fluid: evidence for `brain-type` N-glycosylation.", "Journal of neurochemistry", "1994 Dec", "Hoffmann A, Nimtz M, Wurster U, Conradt HS" ], [ "P14625-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P12110-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P07711-1", "26791533", "N-Glycoproteomics of Human Seminal Plasma Glycoproteins.", "Journal of proteome research", "2016 Mar 4", "Saraswat M, Joenvaara S, Tomar AK, Singh S, Yadav S, Renkonen R" ], [ "P02790-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "Q00987-1", "29671580", "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "Analytical chemistry", "2018 May 15", "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H" ], [ "P01215-1", "1991473", "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "European journal of biochemistry", "1991 Jan 1", "Weisshaar G, Hiyama J, Renwick AG, Nimtz M" ], [ "P09603-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P07602-1", "2110822", "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "Biochemistry", "1990 Mar 27", "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S" ], [ "Q13296-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "Q9NQX5-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P02787-1", "10029548", "X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.", "Biochemistry", "1999 Feb 23", "Bewley MC, Tam BM, Grewal J, He S, Shewry S, Murphy ME, Mason AB, Woodworth RC, Baker EN, MacGillivray RT" ], [ "P01042-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "O60487-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P01588-1", "2813359", "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "Proceedings of the National Academy of Sciences of the United States of America", "1989 Oct", "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A" ], [ "P15586-1", "29741879", "Reanalysis of Global Proteomic and Phosphoproteomic Data Identified a Large Number of Glycopeptides.", "Analytical chemistry", "2018 Jul 3", "Hu Y, Shah P, Clark DJ, Ao M, Zhang H" ], [ "P01591-1", "24766575", "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "Journal of proteome research", "2014 Jun 6", "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P" ], [ "P98164-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ], [ "P15144-1", "30459171", "Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO).", "Molecular systems biology", "2018 Nov 20", "Yang W, Ao M, Hu Y, Li QK, Zhang H" ] ] }, "readme": "Name\n - Human Proteoform Citations (UniCarbKB)\n\nVersion\n - 1.5.23\n\nCreated on\n - 2019-04-16T16:31:37.511217\n\nModified on\n - 2020-04-10T11:42:00.294531\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Proteoform Citations (UniCarbKB) contains human [taxid:9606] publication information of glycoproteins from UniCarbKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniCarbKB. The dataset is contributed by UniCarbKB and processed by GlyGen. If you use this dataset please provide proper attribution to UniCarbKB and GlyGen [UniCarbKB - https://academic.oup.com/nar/article/42/D1/D215/1052197 ,https://doi.org/10.1093/nar/gkt1128]\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - UniCarbKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Output Subdomain\n Name: human_proteoform_citations_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_citations_unicarbkb.csv\n Name: human_proteoform_citations_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_citations_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"1077\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"158\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"39\"\n Name: \"authors\"\n Description: \"Authors of the associated publications\"\n Unique Values: \"156\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"149\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"158\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/human_proteoform_citations_unicarbkb.csv" }