{
    "bcoid": "GLY_000126",
    "title": "Mouse UniProtKB Xref Reactome",
    "description": "TheMouse UniProtKB Xref Reactome contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...",
    "filename": "mouse_protein_xref_reactome.csv",
    "filetype": "csv",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Protein",
        "tags": "Reactome cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q9JHR7-1...",
                "R-MMU-903324..."
            ],
            [
                "Q9JHR7-1...",
                "R-MMU-903324..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "database_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "database_id"
                },
                {
                    "type": "string",
                    "label": "database_label"
                }
            ],
            [
                "Q9JHR7-1",
                "R-MMU-9033241",
                "Peroxisomal protein import"
            ],
            [
                "Q9JHR7-1",
                "R-MMU-9033241",
                "Peroxisomal protein import"
            ],
            [
                "Q9JHR7-1",
                "R-MMU-5689880",
                "Ub-specific processing proteases"
            ],
            [
                "B2RXV4-1",
                "R-MMU-917937",
                "Iron uptake and transport"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-141430",
                "Inactivation of APC/C via direct inhibition of the APC/C complex"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-141444",
                "Amplification  of signal from unattached  kinetochores via a MAD2  inhibitory signal"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-141444",
                "Amplification  of signal from unattached  kinetochores via a MAD2  inhibitory signal"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-141444",
                "Amplification  of signal from unattached  kinetochores via a MAD2  inhibitory signal"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-141444",
                "Amplification  of signal from unattached  kinetochores via a MAD2  inhibitory signal"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-2500257",
                "Resolution of Sister Chromatid Cohesion"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-2500257",
                "Resolution of Sister Chromatid Cohesion"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-2467813",
                "Separation of Sister Chromatids"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-2467813",
                "Separation of Sister Chromatids"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-2500257",
                "Resolution of Sister Chromatid Cohesion"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-2500257",
                "Resolution of Sister Chromatid Cohesion"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-68877",
                "Mitotic Prometaphase"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-5663220",
                "RHO GTPases Activate Formins"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-5663220",
                "RHO GTPases Activate Formins"
            ],
            [
                "E9Q3P4-1",
                "R-MMU-5663220",
                "RHO GTPases Activate Formins"
            ],
            [
                "Q9CXG9-1",
                "R-MMU-212300",
                "PRC2 methylates histones and DNA"
            ],
            [
                "Q9CXG9-1",
                "R-MMU-212300",
                "PRC2 methylates histones and DNA"
            ],
            [
                "Q07968-1",
                "R-MMU-140875",
                "Common Pathway of Fibrin Clot Formation"
            ],
            [
                "Q07968-1",
                "R-MMU-140875",
                "Common Pathway of Fibrin Clot Formation"
            ],
            [
                "Q9CXG3-1",
                "R-MMU-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "Q9CXG3-1",
                "R-MMU-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "Q9CXG3-1",
                "R-MMU-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "Q9CXG3-1",
                "R-MMU-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "Q9CXG3-1",
                "R-MMU-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "Q9CXG3-1",
                "R-MMU-72163",
                "mRNA Splicing - Major Pathway"
            ],
            [
                "B1AQ89-1",
                "R-MMU-6805567",
                "Keratinization"
            ],
            [
                "B1AQ85-1",
                "R-MMU-6805567",
                "Keratinization"
            ],
            [
                "P01942-1",
                "R-MMU-1237044",
                "Erythrocytes take up carbon dioxide and release oxygen"
            ],
            [
                "P01942-1",
                "R-MMU-1247673",
                "Erythrocytes take up oxygen and release carbon dioxide"
            ],
            [
                "P01942-1",
                "R-MMU-2168880",
                "Scavenging of heme from plasma"
            ],
            [
                "P01942-1",
                "R-MMU-2168880",
                "Scavenging of heme from plasma"
            ],
            [
                "P01942-1",
                "R-MMU-2168880",
                "Scavenging of heme from plasma"
            ],
            [
                "P01942-1",
                "R-MMU-1237044",
                "Erythrocytes take up carbon dioxide and release oxygen"
            ],
            [
                "P01942-1",
                "R-MMU-2168880",
                "Scavenging of heme from plasma"
            ],
            [
                "P01942-1",
                "R-MMU-2168880",
                "Scavenging of heme from plasma"
            ],
            [
                "P03899-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03899-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03899-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03899-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03899-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03899-1",
                "R-MMU-611105",
                "Respiratory electron transport"
            ],
            [
                "O35153-1",
                "R-MMU-6807878",
                "COPI-mediated anterograde transport"
            ],
            [
                "O35153-1",
                "R-MMU-6807878",
                "COPI-mediated anterograde transport"
            ],
            [
                "O35153-1",
                "R-MMU-6807878",
                "COPI-mediated anterograde transport"
            ],
            [
                "O35153-1",
                "R-MMU-6807878",
                "COPI-mediated anterograde transport"
            ],
            [
                "O35153-1",
                "R-MMU-6811438",
                "Intra-Golgi traffic"
            ],
            [
                "O35153-1",
                "R-MMU-6811438",
                "Intra-Golgi traffic"
            ],
            [
                "O35153-1",
                "R-MMU-6811438",
                "Intra-Golgi traffic"
            ],
            [
                "P03893-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03893-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03893-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03893-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03893-1",
                "R-MMU-6799198",
                "Complex I biogenesis"
            ],
            [
                "P03893-1",
                "R-MMU-611105",
                "Respiratory electron transport"
            ],
            [
                "Q9QYH9-1",
                "R-MMU-5668541",
                "TNFR2 non-canonical NF-kB pathway"
            ],
            [
                "Q9QYH9-1",
                "R-MMU-5668541",
                "TNFR2 non-canonical NF-kB pathway"
            ],
            [
                "Q9QYH9-1",
                "R-MMU-5668541",
                "TNFR2 non-canonical NF-kB pathway"
            ],
            [
                "Q9QYH9-1",
                "R-MMU-5668541",
                "TNFR2 non-canonical NF-kB pathway"
            ],
            [
                "Q9QYH9-1",
                "R-MMU-5676594",
                "TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway"
            ],
            [
                "Q9QYH9-1",
                "R-MMU-5676594",
                "TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway"
            ],
            [
                "P52479-1",
                "R-MMU-5689880",
                "Ub-specific processing proteases"
            ],
            [
                "P52479-1",
                "R-MMU-5689880",
                "Ub-specific processing proteases"
            ],
            [
                "P52479-1",
                "R-MMU-5656169",
                "Termination of translesion DNA synthesis"
            ],
            [
                "P52479-1",
                "R-MMU-5656169",
                "Termination of translesion DNA synthesis"
            ],
            [
                "P52479-1",
                "R-MMU-5689880",
                "Ub-specific processing proteases"
            ],
            [
                "Q3SXJ3-1",
                "R-MMU-381753",
                "Olfactory Signaling Pathway"
            ],
            [
                "O08537-1",
                "R-MMU-1257604",
                "PIP3 activates AKT signaling"
            ],
            [
                "O08537-1",
                "R-MMU-6811558",
                "PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling"
            ],
            [
                "O08537-1",
                "R-MMU-383280",
                "Nuclear Receptor transcription pathway"
            ],
            [
                "O08537-1",
                "R-MMU-383280",
                "Nuclear Receptor transcription pathway"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-8939211",
                "ESR-mediated signaling"
            ],
            [
                "O08537-1",
                "R-MMU-8939211",
                "ESR-mediated signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ],
            [
                "O08537-1",
                "R-MMU-9009391",
                "Extra-nuclear estrogen signaling"
            ]
        ]
    },
    "readme": "Name\n   - Mouse UniProtKB Xref Reactome\n\nVersion\n   - 1.5.23\n\nCreated on\n  - 2019-03-15T16:16:23.633025\n\nModified on\n   - 2020-04-10T12:42:51.293005\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - TheMouse UniProtKB Xref Reactome contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to Reactome database accessions/identifiers.  The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database.\n\nDescription Domain\n   Keywords\n   - pathways\n   - reactions\n   - REACTOME\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to REACTOME database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n      Name: mouse_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n   Output Subdomain\n      Name: mouse_protein_xref_reactome.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_reactome.csv\n      Name: mouse_protein_xref_reactome.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_reactome.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"9217\"\n      Name: \"database_label\"\n     Description: \"Label or name assigned to the corresponding identifier in the source database\"\n      Unique Values: \"1309\"\n      Name: \"database_id\"\n     Description: \"Identifier in the database\"\n      Unique Values: \"1309\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_reactome.csv"
}