{ "bcoid": "GLY_000109", "title": "Mouse UniProtKB Xref KEGG PATHWAY", "description": "The Mouse UniProtKB Xref KEGG PATHWAY contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Kegg Pathway cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "mmu:99237..." ], [ "Q8BH27-1...", "mmu:230316..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8BH24-1", "mmu:99237", "" ], [ "Q8BH27-1", "mmu:230316", "" ], [ "Q8BH26-1", "mmu:320351", "" ], [ "Q8VF69-1", "mmu:258421", "" ], [ "Q8VF63-1", "mmu:258413", "" ], [ "Q8VF62-1", "mmu:258412", "" ], [ "Q8VF66-1", "mmu:258418", "" ], [ "Q8VF65-1", "mmu:258417", "" ], [ "Q8VF64-1", "mmu:258414", "" ], [ "B2RXV4-1", "mmu:226844", "" ], [ "E9Q3P4-1", "mmu:108000", "" ], [ "Q9CXG9-1", "mmu:74016", "" ], [ "Q07968-1", "mmu:14060", "" ], [ "Q9CXG3-1", "mmu:67418", "" ], [ "B1AQ85-1", "mmu:68673", "" ], [ "P03899-1", "mmu:17718", "" ], [ "O35153-1", "mmu:54399", "" ], [ "P03893-1", "mmu:17717", "" ], [ "Q9QYH9-1", "mmu:50930", "" ], [ "P52479-1", "mmu:22224", "" ], [ "P02762-1", "mmu:100038948", "" ], [ "P02762-1", "mmu:100039177", "" ], [ "P02762-1", "mmu:100189605", "" ], [ "Q9QYH6-1", "mmu:94275", "" ], [ "Q3SXJ3-1", "mmu:258453", "" ], [ "O08537-1", "mmu:13983", "" ], [ "Q08AU9-1", "mmu:69066", "" ], [ "Q08AU7-1", "mmu:68515", "" ], [ "Q5EBH1-1", "mmu:54354", "" ], [ "Q61409-1", "mmu:18576", "" ], [ "A2AVK5-1", "mmu:258975", "" ], [ "Q80YU0-1", "mmu:241850", "" ], [ "Q61400-1", "mmu:26366", "" ], [ "Q61406-1", "mmu:50702", "" ], [ "Q5SRT8-1", "mmu:380694", "" ], [ "P70414-1", "mmu:20541", "" ], [ "P70419-1", "mmu:14425", "" ], [ "Q9EP78-1", "mmu:60322", "" ], [ "Q9EP79-1", "mmu:113849", "" ], [ "Q9EP72-1", "mmu:73024", "" ], [ "Q9EP73-1", "mmu:60533", "" ], [ "Q9EP71-1", "mmu:75646", "" ], [ "Q9EP75-1", "mmu:64385", "" ], [ "Q3URK1-1", "mmu:78465", "" ], [ "S4R213-1", "mmu:242707", "" ], [ "P53702-1", "mmu:15159", "" ], [ "Q8R349-1", "mmu:69957", "" ], [ "Q8R344-1", "mmu:72654", "" ], [ "O08911-1", "mmu:29857", "" ], [ "Q80WC9-1", "mmu:231326", "" ], [ "O08912-1", "mmu:14423", "" ], [ "O08915-1", "mmu:11632", "" ], [ "O08914-1", "mmu:14073", "" ], [ "O08917-1", "mmu:14251", "" ], [ "Q80WC3-1", "mmu:231861", "" ], [ "O08918-1", "mmu:12452", "" ], [ "Q80WC1-1", "mmu:320538", "" ], [ "Q80WC7-1", "mmu:231801", "" ], [ "Q9JHY4-1", "mmu:192201", "" ], [ "Q91ZK4-1", "mmu:140477", "" ], [ "Q91ZK0-1", "mmu:226896", "" ], [ "Q9D4U4-1", "mmu:385317", "" ], [ "A0A3Q4EGJ1-1", "mmu:381852", "" ], [ "Q8BZM0-1", "mmu:240756", "" ], [ "Q8BZM1-1", "mmu:170823", "" ], [ "Q4VC33-1", "mmu:59003", "" ], [ "Q66GT5-1", "mmu:66461", "" ], [ "P50429-1", "mmu:11881", "" ], [ "Q8BTJ4-1", "mmu:224794", "" ], [ "Q99LV7-1", "mmu:72084", "" ], [ "Q4G5Y1-1", "mmu:69554", "" ], [ "P50427-1", "mmu:20905", "" ], [ "P59708-1", "mmu:66055", "" ], [ "F8VQK3-1", "mmu:234889", "" ], [ "Q9R1N9-1", "mmu:12817", "" ], [ "A2AT96-1", "mmu:258762", "" ], [ "Q3V3Q4-1", "mmu:100033459", "" ], [ "Q7M729-1", "mmu:399548", "" ], [ "Q3V3Q7-1", "mmu:217893", "" ], [ "Q7M724-1", "mmu:387341", "" ], [ "Q7M725-1", "mmu:387342", "" ], [ "Q7M720-1", "mmu:387349", "" ], [ "Q7M721-1", "mmu:387348", "" ], [ "Q7M722-1", "mmu:387346", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref KEGG PATHWAY\n\nVersion\n - 1.5.23\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T12:40:17.376979\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref KEGG PATHWAY contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks.\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_kegg.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_kegg.csv\n Name: mouse_protein_xref_kegg.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"19150\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"19447\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_kegg.csv" }