{
    "bcoid": "GLY_000438",
    "title": "SARS-CoV1 Protein Recommended Names (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-1) Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended ...",
    "filename": "sarscov1_protein_recnames.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Protein Recommended Names",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59596-1...",
                "Membrane pro..."
            ],
            [
                "P0C6U8-1...",
                "Replicase po..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "recommended_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "recommended_name_full"
                },
                {
                    "type": "string",
                    "label": "recommended_name_short"
                },
                {
                    "type": "string",
                    "label": "ec_name"
                }
            ],
            [
                "P59596-1",
                "Membrane protein",
                "M protein",
                ""
            ],
            [
                "P0C6U8-1",
                "Replicase polyprotein 1a",
                "pp1a",
                ""
            ],
            [
                "P59594-1",
                "Spike glycoprotein",
                "S glycoprotein",
                ""
            ],
            [
                "P59595-1",
                "Nucleoprotein",
                "",
                ""
            ],
            [
                "Q7TLC7-1",
                "Uncharacterized protein 14",
                "",
                ""
            ],
            [
                "Q80H93-1",
                "Non-structural protein 8b",
                "ns8b",
                ""
            ],
            [
                "P59635-1",
                "Protein 7a",
                "",
                ""
            ],
            [
                "Q7TFA1-1",
                "Protein non-structural 7b",
                "ns7b",
                ""
            ],
            [
                "Q7TFA0-1",
                "Protein non-structural 8a",
                "ns8a",
                ""
            ],
            [
                "P59633-1",
                "Non-structural protein 3b",
                "ns3b",
                ""
            ],
            [
                "P59632-1",
                "Protein 3a",
                "",
                ""
            ],
            [
                "P59637-1",
                "Envelope small membrane protein",
                "E protein",
                ""
            ],
            [
                "P59637-1",
                "Envelope small membrane protein",
                "sM protein",
                ""
            ],
            [
                "P59636-1",
                "Protein 9b",
                "",
                ""
            ],
            [
                "P0C6X7-1",
                "Replicase polyprotein 1ab",
                "pp1ab",
                ""
            ],
            [
                "P59634-1",
                "Non-structural protein 6",
                "ns6",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Protein Recommended Names (UniProtKB)\n\nVersion\n   - 1.5.23\n\nCreated on\n  - 2020-04-03T11:46:41.584409\n\nModified on\n   - 2020-04-09T18:47:42.102784\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Protein Recommended Names (UniProtKB) dataset contains UniProtKB recommended names for sarscov1 [taxid:694009] proteins. The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein recommended name\n   - protein name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB recommended names for protein accessions from the triplestore containing triples from nt file and extracts the recommended names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/extractor/extract-from-endpoint.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-human-sars-coronavirus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-human-sars-coronavirus.nt\n      Name: sarscov1_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov1_protein_recnames.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_recnames.csv\n      Name: sarscov1_protein_recnames.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_recnames.stat.csv\n\nFields\n      Name: \"recommended_name_short\"\n     Description: \"Recommended short name of the protein in UniProtKB database\"\n      Unique Values: \"12\"\n      Name: \"ec_name\"\n     Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"1\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"15\"\n      Name: \"recommended_name_full\"\n     Description: \"Recommended full name of the protein in the UniProtKB database\"\n      Unique Values: \"15\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_recnames.csv"
}