{
    "bcoid": "GLY_000425",
    "title": "SARS-CoV1 Gene Symbols (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-1) Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names ...",
    "filename": "sarscov1_protein_genenames_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "Gene Symbols",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P59596-1...",
                "M..."
            ],
            [
                "P0C6U8-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol_recommended"
                },
                {
                    "type": "string",
                    "label": "gene_symbol_alternative"
                },
                {
                    "type": "string",
                    "label": "orf_name"
                }
            ],
            [
                "P59596-1",
                "M",
                "",
                "5"
            ],
            [
                "P0C6U8-1",
                "",
                "",
                "1a"
            ],
            [
                "P59594-1",
                "S",
                "",
                "2"
            ],
            [
                "P59595-1",
                "N",
                "",
                "9a"
            ],
            [
                "Q7TLC7-1",
                "",
                "",
                "ORF14"
            ],
            [
                "Q80H93-1",
                "",
                "",
                "8b"
            ],
            [
                "P59635-1",
                "",
                "",
                "7a"
            ],
            [
                "Q7TFA1-1",
                "",
                "",
                "7b"
            ],
            [
                "Q7TFA0-1",
                "",
                "",
                "8a"
            ],
            [
                "P59633-1",
                "",
                "",
                "3b"
            ],
            [
                "P59632-1",
                "",
                "",
                "3a"
            ],
            [
                "P59637-1",
                "E",
                "sM",
                "4"
            ],
            [
                "P59636-1",
                "",
                "",
                "9b"
            ],
            [
                "P0C6X7-1",
                "rep",
                "",
                "1a-1b"
            ],
            [
                "P59634-1",
                "",
                "",
                "6"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 Gene Symbols (UniProtKB)\n\nVersion\n   - 1.5.23\n\nCreated on\n  - 2020-04-03T00:21:52.771924\n\nModified on\n   - 2020-04-09T18:42:44.385015\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for sarscov1 [taxid:694009] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature  commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein alternative name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-human-sars-coronavirus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-human-sars-coronavirus.nt\n      Name: sarscov1_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_masterlist.csv\n   Output Subdomain\n      Name: sarscov1_protein_genenames_uniprotkb.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_genenames_uniprotkb.csv\n      Name: sarscov1_protein_genenames_uniprotkb.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_genenames_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"15\"\n      Name: \"orf_name\"\n     Description: \"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\n      Unique Values: \"15\"\n      Name: \"gene_symbol_recommended\"\n     Description: \"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\n      Unique Values: \"6\"\n      Name: \"gene_symbol_alternative\"\n     Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/sarscov1_protein_genenames_uniprotkb.csv"
}