{ "bcoid": "GLY_000401", "title": "Human Gene Symbols (UniProtKB)", "description": "The Human Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for human [taxid:9606] ...", "filename": "human_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Gene Symbols", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9Y6C9-1...", "MTCH2..." ], [ "Q658T7-1...", "FAM90A2P..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "Q9Y6C9-1", "MTCH2", "MIMP", "HSPC032" ], [ "Q658T7-1", "FAM90A2P", "", "" ], [ "P30613-1", "PKLR", "PK1", "" ], [ "P30613-1", "PKLR", "PKL", "" ], [ "Q5MIZ7-1", "PPP4R3B", "KIAA1387", "" ], [ "Q5MIZ7-1", "PPP4R3B", "PP4R3B", "" ], [ "Q5MIZ7-1", "PPP4R3B", "SMEK2", "" ], [ "A0A1W2PQ27-1", "SSU72P7", "", "" ], [ "P51788-1", "CLCN2", "", "" ], [ "P23919-1", "DTYMK", "CDC8", "" ], [ "P23919-1", "DTYMK", "TMPK", "" ], [ "P23919-1", "DTYMK", "TYMK", "" ], [ "Q8NHX4-1", "SPATA3", "TSARG1", "" ], [ "Q8NHX9-1", "TPCN2", "TPC2", "" ], [ "Q9NXR8-1", "ING3", "", "HSPC301" ], [ "Q9C0H5-1", "ARHGAP39", "KIAA1688", "" ], [ "Q9C0H9-5", "SRCIN1", "KIAA1684", "" ], [ "Q9C0H9-5", "SRCIN1", "P140", "" ], [ "Q9C0H9-5", "SRCIN1", "SNIP", "" ], [ "Q9NXR1-2", "NDE1", "NUDE", "" ], [ "Q07960-1", "ARHGAP1", "CDC42GAP", "" ], [ "Q07960-1", "ARHGAP1", "RHOGAP1", "" ], [ "Q9NXR5-1", "ANKRD10", "", "" ], [ "Q9NXR7-2", "BABAM2", "BRCC45", "" ], [ "Q9NXR7-2", "BABAM2", "BRE", "" ], [ "Q96J66-1", "ABCC11", "MRP8", "" ], [ "P40424-1", "PBX1", "PRL", "" ], [ "P40425-1", "PBX2", "G17", "" ], [ "P40426-1", "PBX3", "", "" ], [ "Q9H2I8-1", "LRMDA", "", "C10orf11" ], [ "Q9H2I8-1", "LRMDA", "", "CDA017" ], [ "P08842-1", "STS", "ARSC1", "" ], [ "P03891-1", "MT-ND2", "MTND2", "" ], [ "P03891-1", "MT-ND2", "NADH2", "" ], [ "P03891-1", "MT-ND2", "ND2", "" ], [ "Q5VUR7-1", "ANKRD20A3", "", "" ], [ "P03897-1", "MT-ND3", "MTND3", "" ], [ "P03897-1", "MT-ND3", "NADH3", "" ], [ "P03897-1", "MT-ND3", "ND3", "" ], [ "P02768-1", "ALB", "", "GIG20" ], [ "P02768-1", "ALB", "", "GIG42" ], [ "P02768-1", "ALB", "", "PRO0903" ], [ "P02768-1", "ALB", "", "PRO1708" ], [ "P02768-1", "ALB", "", "PRO2044" ], [ "P02768-1", "ALB", "", "PRO2619" ], [ "P02768-1", "ALB", "", "PRO2675" ], [ "P02768-1", "ALB", "", "PRO1341" ], [ "P02760-1", "AMBP", "HCP", "" ], [ "P02760-1", "AMBP", "ITIL", "" ], [ "P02763-1", "ORM1", "AGP1", "" ], [ "P02765-1", "AHSG", "FETUA", "PRO2743" ], [ "P02766-1", "TTR", "PALB", "" ], [ "Q9H5J8-1", "TAF1D", "JOSD3", "" ], [ "Q9P2J3-1", "KLHL9", "KIAA1354", "" ], [ "P39023-1", "RPL3", "", "SW-cl.32" ], [ "H0YL14-1", "TMEM250", "C9orf69", "" ], [ "O43399-1", "TPD52L2", "", "" ], [ "Q9P219-1", "CCDC88C", "DAPLE", "" ], [ "Q9P219-1", "CCDC88C", "KIAA1509", "" ], [ "Q9P218-1", "COL20A1", "KIAA1510", "" ], [ "Q9P215-1", "POGK", "KIAA1513", "LST003" ], [ "Q9P215-1", "POGK", "KIAA1513", "SLTP003" ], [ "Q9P217-1", "ZSWIM5", "KIAA1511", "" ], [ "Q9P212-1", "PLCE1", "KIAA1516", "" ], [ "Q9P212-1", "PLCE1", "PLCE", "" ], [ "Q9P212-1", "PLCE1", "PPLC", "" ], [ "Q9H3M7-1", "TXNIP", "VDUP1", "" ], [ "Q9H3M0-1", "KCNF1", "", "" ], [ "Q5VVP1-1", "SPATA31A6", "FAM75A6", "" ], [ "O60603-1", "TLR2", "TIL4", "" ], [ "Q9BZG2-1", "ACP4", "ACPT", "" ], [ "Q9BZG8-1", "DPH1", "DPH2L", "" ], [ "Q9BZG8-1", "DPH1", "DPH2L1", "" ], [ "Q9BZG8-1", "DPH1", "OVCA1", "" ], [ "Q8NBD8-1", "TMEM229B", "C14orf83", "" ], [ "P01236-1", "PRL", "", "" ], [ "Q92598-1", "HSPH1", "HSP105", "" ], [ "Q92598-1", "HSPH1", "HSP110", "" ], [ "Q92598-1", "HSPH1", "KIAA0201", "" ], [ "Q8N865-1", "C7orf31", "", "" ], [ "Q15573-1", "TAF1A", "", "" ], [ "A6NCC3-2", "GOLGA8O", "", "" ], [ "Q15572-1", "TAF1C", "", "" ], [ "Q6NX49-1", "ZNF544", "", "" ] ] }, "readme": "Name\n - Human Gene Symbols (UniProtKB)\n\nVersion\n - 1.5.23\n\nCreated on\n - 2020-03-16T11:26:15.442401\n\nModified on\n - 2020-04-10T11:50:21.709627\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for human [taxid:9606] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_genenames_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_genenames_uniprotkb.csv\n Name: human_protein_genenames_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_genenames_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"20419\"\n Name: \"orf_name\"\n Description: \"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\n Unique Values: \"2649\"\n Name: \"gene_symbol_recommended\"\n Description: \"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\n Unique Values: \"20433\"\n Name: \"gene_symbol_alternative\"\n Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n Unique Values: \"21037\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/human_protein_genenames_uniprotkb.csv" }