{ "bcoid": "GLY_000233", "title": "Mouse UniProtKB Xref IntAct", "description": "The Mouse UniProtKB Xref IntAct dataset contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_intact.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Intact cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "Q8BH24..." ], [ "Q9JHR7-1...", "Q9JHR7..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8BH24-1", "Q8BH24", "" ], [ "Q9JHR7-1", "Q9JHR7", "" ], [ "E9Q3P4-1", "E9Q3P4", "" ], [ "Q07968-1", "Q07968", "" ], [ "P01942-1", "P01942", "" ], [ "P03893-1", "P03893", "" ], [ "Q9QYH9-1", "Q9QYH9", "" ], [ "P52479-1", "P52479", "" ], [ "Q9QYH6-1", "Q9QYH6", "" ], [ "O08537-1", "O08537", "" ], [ "Q5EBH1-1", "Q5EBH1", "" ], [ "P70414-1", "P70414", "" ], [ "P70419-1", "P70419", "" ], [ "Q3URK3-1", "Q3URK3", "" ], [ "Q9EP72-1", "Q9EP72", "" ], [ "Q9EP73-1", "Q9EP73", "" ], [ "Q9EP71-1", "Q9EP71", "" ], [ "Q9EP75-1", "Q9EP75", "" ], [ "P53702-1", "P53702", "" ], [ "Q8R349-1", "Q8R349", "" ], [ "Q8R344-1", "Q8R344", "" ], [ "O08911-1", "O08911", "" ], [ "O08912-1", "O08912", "" ], [ "O08915-1", "O08915", "" ], [ "O08917-1", "O08917", "" ], [ "Q80WC1-1", "Q80WC1", "" ], [ "Q91ZK0-1", "Q91ZK0", "" ], [ "Q4VC33-1", "Q4VC33", "" ], [ "Q8BTJ4-1", "Q8BTJ4", "" ], [ "Q99LV7-1", "Q99LV7", "" ], [ "Q4G5Y1-1", "Q4G5Y1", "" ], [ "P50427-1", "P50427", "" ], [ "P59708-1", "P59708", "" ], [ "P10649-1", "P10649", "" ], [ "P10648-1", "P10648", "" ], [ "Q9D518-1", "Q9D518", "" ], [ "P21661-1", "P21661", "" ], [ "Q8BIQ5-1", "Q8BIQ5", "" ], [ "O88668-1", "O88668", "" ], [ "O88667-1", "O88667", "" ], [ "O88665-1", "O88665", "" ], [ "D3Z6Q9-1", "D3Z6Q9", "" ], [ "Q9DB07-1", "Q9DB07", "" ], [ "Q9DB05-1", "Q9DB05", "" ], [ "Q8BGW0-1", "Q8BGW0", "" ], [ "Q6PDM2-1", "Q6PDM2", "" ], [ "Q499E5-1", "Q499E5", "" ], [ "Q499E6-1", "Q499E6", "" ], [ "A2AAE1-1", "A2AAE1", "" ], [ "P62631-1", "P62631", "" ], [ "Q3TNL8-1", "Q3TNL8", "" ], [ "Q9QZD9-1", "Q9QZD9", "" ], [ "Q9QZD8-1", "Q9QZD8", "" ], [ "Q9Z277-1", "Q9Z277", "" ], [ "P56931-1", "P56931", "" ], [ "Q9QUN7-1", "Q9QUN7", "" ], [ "Q9QUN3-1", "Q9QUN3", "" ], [ "Q9QUN9-1", "Q9QUN9", "" ], [ "Q9JI71-1", "Q9JI71", "" ], [ "Q91Z69-1", "Q91Z69", "" ], [ "Q91Z67-1", "Q91Z67", "" ], [ "Q00977-1", "Q00977", "" ], [ "Q91YI1-1", "Q91YI1", "" ], [ "Q91YI0-1", "Q91YI0", "" ], [ "Q91YI4-1", "Q91YI4", "" ], [ "O70274-1", "O70274", "" ], [ "Q69Z99-1", "Q69Z99", "" ], [ "Q5NCY0-1", "Q5NCY0", "" ], [ "Q9ESN9-1", "Q9ESN9", "" ], [ "Q9ESN6-1", "Q9ESN6", "" ], [ "Q9ESN4-1", "Q9ESN4", "" ], [ "Q9ESN5-1", "Q9ESN5", "" ], [ "Q0PHV7-1", "Q0PHV7", "" ], [ "Q99LI2-1", "Q99LI2", "" ], [ "Q99LI5-1", "Q99LI5", "" ], [ "Q5U4C1-1", "Q5U4C1", "" ], [ "Q99LI8-1", "Q99LI8", "" ], [ "Q99LI9-1", "Q99LI9", "" ], [ "Q91XE4-1", "Q91XE4", "" ], [ "Q9D5T7-1", "Q9D5T7", "" ], [ "P56395-1", "P56395", "" ], [ "P56394-1", "P56394", "" ], [ "Q9ERD7-1", "Q9ERD7", "" ], [ "Q9ERD8-1", "Q9ERD8", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref IntAct\n\nVersion\n - 1.5.23\n\nCreated on\n - 2019-09-06T14:06:38.961010\n\nModified on\n - 2020-04-10T12:45:01.709793\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref IntAct dataset contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to IntAct database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - IntAct provides a freely available, open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions and are freely available. The IntAct Team also produce the Complex Portal\n\nDescription Domain\n Keywords\n - molecular interaction data\n - protein-protein interaction\n - IntAct\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to IntAct database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_intact.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_intact.csv\n Name: mouse_protein_xref_intact.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_intact.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"8078\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"8078\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_intact.csv" }