{
    "bcoid": "GLY_000115",
    "title": "Human UniProtKB Xref OrthoDB",
    "description": "The Human UniProtKB Xref OrthoDB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...",
    "filename": "human_protein_xref_orthodb.csv",
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        "species": "Homo sapiens",
        "molecule": "Protein",
        "tags": "Orthodb cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
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    "readme": "Name\n   - Human UniProtKB Xref OrthoDB\n\nVersion\n   - 1.5.23\n\nCreated on\n  - 2019-03-15T14:55:58.596936\n\nModified on\n   - 2020-04-10T11:37:34.729582\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Human UniProtKB Xref OrthoDB contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to OrthoDB database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   -  OrthoDB is a comprehensive catalog of orthologs, i.e. descendants from a single gene of the last common ancestor of a specific phylogeny radiation termed level-of-orthology.\n\nDescription Domain\n   Keywords\n   - orthologs\n   - OrthoDB\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OrthoDB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-homo-sapiens.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-homo-sapiens.nt\n      Name: human_protein_masterlist.csv\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_masterlist.csv\n   Output Subdomain\n      Name: human_protein_xref_orthodb.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_xref_orthodb.csv\n      Name: human_protein_xref_orthodb.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_xref_orthodb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"18593\"\n      Name: \"database_label\"\n     Description: \"Label or name assigned to the corresponding identifier in the source database\"\n      Unique Values: \"1\"\n      Name: \"database_id\"\n     Description: \"Identifier in the database\"\n      Unique Values: \"9612\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/human_protein_xref_orthodb.csv"
}