{ "bcoid": "GLY_000091", "title": "Mouse UniProtKB Xref Bgee", "description": "The Mouse UniProtKB Xref Bgee contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Bgee", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "ENSMUSG00000..." ], [ "Q8BH27-1...", "ENSMUSG00000..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8BH24-1", "ENSMUSG00000068040", "Expressed in 272 organ(s), highest expression level in humerus cartilage element" ], [ "Q8BH27-1", "ENSMUSG00000039270", "Expressed in 237 organ(s), highest expression level in utricle of membranous labyrinth" ], [ "Q8BH26-1", "ENSMUSG00000046675", "Expressed in 27 organ(s), highest expression level in superior cervical ganglion" ], [ "Q8VF69-1", "ENSMUSG00000048919", "Expressed in 1 organ(s), highest expression level in olfactory epithelium" ], [ "Q8VF63-1", "ENSMUSG00000060583", "Expressed in 1 organ(s), highest expression level in brain" ], [ "Q8VF62-1", "ENSMUSG00000066749", "Expressed in 6 organ(s), highest expression level in female gonad" ], [ "Q8VF65-1", "ENSMUSG00000094289", "Expressed in 1 organ(s), highest expression level in lung" ], [ "Q8VF64-1", "ENSMUSG00000094461", "Expressed in 3 organ(s), highest expression level in female gonad" ], [ "B2RXV4-1", "ENSMUSG00000066595", "Expressed in 235 organ(s), highest expression level in small intestine" ], [ "E9Q3P4-1", "ENSMUSG00000026605", "Expressed in 206 organ(s), highest expression level in primary oocyte" ], [ "A0A087WRQ3-1", "ENSMUSG00000076758", "Expressed in 14 organ(s), highest expression level in thymus" ], [ "Q9CXG9-1", "ENSMUSG00000026873", "Expressed in 74 organ(s), highest expression level in cortex of kidney" ], [ "Q07968-1", "ENSMUSG00000026368", "Expressed in 48 organ(s), highest expression level in liver" ], [ "A5H0M4-1", "ENSMUSG00000063932", "Expressed in 8 organ(s), highest expression level in testis" ], [ "Q9CXG3-1", "ENSMUSG00000015757", "Expressed in 278 organ(s), highest expression level in blood" ], [ "B1AQ89-1", "ENSMUSG00000078130", "Expressed in 5 organ(s), highest expression level in zone of skin" ], [ "B1AQ87-1", "ENSMUSG00000078276", "Expressed in 2 organ(s), highest expression level in thymus" ], [ "B1AQ85-1", "ENSMUSG00000044649", "Expressed in 25 organ(s), highest expression level in skin of back" ], [ "P03899-1", "ENSMUSG00000064360", "Expressed in 20 organ(s), highest expression level in thymus" ], [ "O35153-1", "ENSMUSG00000025484", "Expressed in 283 organ(s), highest expression level in islet of Langerhans" ], [ "P03893-1", "ENSMUSG00000064345", "Expressed in 20 organ(s), highest expression level in brown adipose tissue" ], [ "Q9QYH9-1", "ENSMUSG00000005824", "Expressed in 16 organ(s), highest expression level in blood" ], [ "P52479-1", "ENSMUSG00000031826", "Expressed in 295 organ(s), highest expression level in embryonic stem cell" ], [ "P02762-1", "ENSMUSG00000078673", "Expressed in 13 organ(s), highest expression level in liver" ], [ "Q9QYH6-1", "ENSMUSG00000025151", "Expressed in 312 organ(s), highest expression level in placenta" ], [ "Q3SXJ3-1", "ENSMUSG00000075113", "Expressed in 5 organ(s), highest expression level in spleen" ], [ "Q08AU7-1", "ENSMUSG00000025141", "Expressed in 68 organ(s), highest expression level in heart" ], [ "Q5EBH1-1", "ENSMUSG00000026430", "Expressed in 258 organ(s), highest expression level in thymus" ], [ "A0A087WSM5-1", "ENSMUSG00000099861", "Expressed in 1 organ(s), highest expression level in testis" ], [ "A2AVK5-1", "ENSMUSG00000075090", "Expressed in 2 organ(s), highest expression level in thymus" ], [ "Q80YU0-1", "ENSMUSG00000055882", "Expressed in 14 organ(s), highest expression level in testis" ], [ "Q61406-1", "ENSMUSG00000057037", "Expressed in 21 organ(s), highest expression level in jejunum" ], [ "Q5SRT8-1", "ENSMUSG00000044707", "Expressed in 160 organ(s), highest expression level in internal carotid artery" ], [ "P70419-1", "ENSMUSG00000026994", "Expressed in 199 organ(s), highest expression level in parotid gland" ], [ "Q9EP78-1", "ENSMUSG00000037347", "Expressed in 142 organ(s), highest expression level in primary oocyte" ], [ "Q9EP79-1", "ENSMUSG00000060816", "Expressed in 4 organ(s), highest expression level in testis" ], [ "Q3URK3-1", "ENSMUSG00000047146", "Expressed in 201 organ(s), highest expression level in embryonic stem cell" ], [ "Q9EP72-1", "ENSMUSG00000055943", "Expressed in 275 organ(s), highest expression level in liver" ], [ "Q9EP73-1", "ENSMUSG00000016496", "Expressed in 101 organ(s), highest expression level in blood" ], [ "Q9EP71-1", "ENSMUSG00000022246", "Expressed in 267 organ(s), highest expression level in renal corpuscle" ], [ "Q9EP75-1", "ENSMUSG00000024292", "Expressed in 55 organ(s), highest expression level in jejunum" ], [ "Q3URK1-1", "ENSMUSG00000070532", "Expressed in 13 organ(s), highest expression level in cerebellum" ], [ "S4R213-1", "ENSMUSG00000070683", "Expressed in 5 organ(s), highest expression level in testis" ], [ "P53702-1", "ENSMUSG00000031352", "Expressed in 282 organ(s), highest expression level in myocardium of ventricle" ], [ "Q8R349-1", "ENSMUSG00000038416", "Expressed in 294 organ(s), highest expression level in midbrain" ], [ "Q8R344-1", "ENSMUSG00000019659", "Expressed in 292 organ(s), highest expression level in saccule of membranous labyrinth" ], [ "O08911-1", "ENSMUSG00000022610", "Expressed in 219 organ(s), highest expression level in muscle tissue" ], [ "Q80WC9-1", "ENSMUSG00000055923", "Expressed in 232 organ(s), highest expression level in indifferent gonad" ], [ "O08912-1", "ENSMUSG00000000420", "Expressed in 331 organ(s), highest expression level in embryo" ], [ "O08915-1", "ENSMUSG00000024847", "Expressed in 288 organ(s), highest expression level in ear vesicle" ], [ "O08914-1", "ENSMUSG00000034171", "Expressed in 217 organ(s), highest expression level in colon" ], [ "O08917-1", "ENSMUSG00000059714", "Expressed in 320 organ(s), highest expression level in dorsal root ganglion" ], [ "O08918-1", "ENSMUSG00000029385", "Expressed in 282 organ(s), highest expression level in ganglionic eminence" ], [ "Q80WC1-1", "ENSMUSG00000038538", "Expressed in 246 organ(s), highest expression level in rostral migratory stream" ], [ "Q80WC7-1", "ENSMUSG00000029722", "Expressed in 262 organ(s), highest expression level in thymus" ], [ "Q9JHY4-1", "ENSMUSG00000018211", "Expressed in 62 organ(s), highest expression level in seminal vesicle" ], [ "Q91ZK4-1", "ENSMUSG00000028707", "Expressed in 71 organ(s), highest expression level in thymus" ], [ "Q91ZK0-1", "ENSMUSG00000042596", "Expressed in 94 organ(s), highest expression level in head" ], [ "Q9D4U7-1", "ENSMUSG00000034493", "Expressed in 13 organ(s), highest expression level in adult mammalian kidney" ], [ "Q9D4U4-1", "ENSMUSG00000048994", "Expressed in 14 organ(s), highest expression level in testis" ], [ "Q8BZM0-1", "ENSMUSG00000026455", "Expressed in 239 organ(s), highest expression level in embryo" ], [ "Q8BZM1-1", "ENSMUSG00000029276", "Expressed in 274 organ(s), highest expression level in retina" ], [ "Q4VC33-1", "ENSMUSG00000079562", "Expressed in 290 organ(s), highest expression level in placenta" ], [ "Q8BTJ4-1", "ENSMUSG00000023961", "Expressed in 238 organ(s), highest expression level in substantia nigra" ], [ "Q4G5Y1-1", "ENSMUSG00000020978", "Expressed in 291 organ(s), highest expression level in primary oocyte" ], [ "P59708-1", "ENSMUSG00000037361", "Expressed in 291 organ(s), highest expression level in vestibular organ" ], [ "F8VQK3-1", "ENSMUSG00000041624", "Expressed in 23 organ(s), highest expression level in cerebral cortex" ], [ "Q9R1N9-1", "ENSMUSG00000058806", "Expressed in 197 organ(s), highest expression level in Meckel's cartilage" ], [ "A2AT96-1", "ENSMUSG00000075161", "Expressed in 2 organ(s), highest expression level in lung" ], [ "Q3V3Q4-1", "ENSMUSG00000066677", "Expressed in 16 organ(s), highest expression level in spleen" ], [ "Q7M729-1", "ENSMUSG00000046480", "Expressed in 131 organ(s), highest expression level in striatum" ], [ "Q7M724-1", "ENSMUSG00000057754", "Expressed in 2 organ(s), highest expression level in thymus" ], [ "Q7M725-1", "ENSMUSG00000053389", "Expressed in 1 organ(s), highest expression level in thymus" ], [ "Q7M720-1", "ENSMUSG00000071150", "Expressed in 2 organ(s), highest expression level in spleen" ], [ "Q7M721-1", "ENSMUSG00000059382", "Expressed in 2 organ(s), highest expression level in bone marrow macrophage" ], [ "Q7M723-1", "ENSMUSG00000061977", "Expressed in 1 organ(s), highest expression level in thymus" ], [ "P10649-1", "ENSMUSG00000058135", "Expressed in 298 organ(s), highest expression level in urinary bladder urothelium" ], [ "P10648-1", "ENSMUSG00000057933", "Expressed in 124 organ(s), highest expression level in adult mammalian kidney" ], [ "Q3UHF7-1", "ENSMUSG00000015501", "Expressed in 284 organ(s), highest expression level in CA1 field of hippocampus" ], [ "Q3UHF3-1", "ENSMUSG00000032727", "Expressed in 250 organ(s), highest expression level in cleaving embryo" ], [ "Q9D516-1", "ENSMUSG00000004994", "Expressed in 144 organ(s), highest expression level in testis" ], [ "Q9D517-1", "ENSMUSG00000001211", "Expressed in 312 organ(s), highest expression level in retina" ], [ "Q9D515-1", "ENSMUSG00000067909", "Expressed in 2 organ(s), highest expression level in testis" ], [ "Q9D513-1", "ENSMUSG00000024155", "Expressed in 32 organ(s), highest expression level in testis" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref Bgee\n\nVersion\n - 1.5.23\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2020-04-10T12:36:19.326409\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref Bgee contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n - Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_bgee.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_bgee.csv\n Name: mouse_protein_xref_bgee.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_bgee.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"19142\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"11541\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"19119\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/mouse_protein_xref_bgee.csv" }