{ "bcoid": "GLY_000033", "title": "Human Protein Information (UniProtKB)", "description": "The Human Protein Information dataset contains human [taxid:9606] UniProtKB canonical accessions with ...", "filename": "human_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "PIGX_HUMAN..." ], [ "Q8TBF4-1...", "ZCRB1_HUMAN..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q8TBF5-1", "PIGX_HUMAN", "28788", "258" ], [ "Q8TBF4-1", "ZCRB1_HUMAN", "24592", "217" ], [ "Q9NRJ4-1", "TULP4_HUMAN", "169000", "1543" ], [ "Q9NQ79-1", "CRAC1_HUMAN", "71421", "661" ], [ "Q9NVL8-1", "CC198_HUMAN", "34690", "296" ], [ "Q9NRQ5-1", "SMCO4_HUMAN", "6738", "59" ], [ "Q8IZF5-1", "AGRF3_HUMAN", "116341", "1079" ], [ "P30613-1", "KPYR_HUMAN", "61830", "574" ], [ "Q5H9L4-1", "TAF7L_HUMAN", "52588", "462" ], [ "Q9BZL4-1", "PP12C_HUMAN", "84881", "782" ], [ "Q9NVL1-1", "FA86C_HUMAN", "18454", "165" ], [ "Q5QJ38-1", "TCHL1_HUMAN", "99275", "904" ], [ "Q9NQ75-1", "CASS4_HUMAN", "87144", "786" ], [ "P20930-1", "FILA_HUMAN", "435170", "4061" ], [ "P20933-1", "ASPG_HUMAN", "37208", "346" ], [ "P20936-1", "RASA1_HUMAN", "116403", "1047" ], [ "A0A1W2PQ27-1", "A0A1W2PQ27_HUMAN", "22511", "194" ], [ "Q8NFX7-1", "STXB6_HUMAN", "23554", "210" ], [ "Q9UM21-1", "MGT4A_HUMAN", "61544", "535" ], [ "Q496A3-1", "SPAS1_HUMAN", "33705", "300" ], [ "P83859-1", "OX26_HUMAN", "14941", "136" ], [ "P40617-1", "ARL4A_HUMAN", "22615", "200" ], [ "Q70EL4-1", "UBP43_HUMAN", "122809", "1123" ], [ "Q8TBF2-1", "PXL2B_HUMAN", "21223", "198" ], [ "Q15573-1", "TAF1A_HUMAN", "52676", "450" ], [ "Q15572-1", "TAF1C_HUMAN", "95213", "869" ], [ "Q9BQP9-1", "BPIA3_HUMAN", "28436", "254" ], [ "Q9H999-1", "PANK3_HUMAN", "41094", "370" ], [ "P23919-1", "KTHY_HUMAN", "23819", "212" ], [ "Q8NHX4-1", "SPTA3_HUMAN", "20901", "192" ], [ "Q8NHX9-1", "TPC2_HUMAN", "85243", "752" ], [ "A8MU46-1", "SMTL1_HUMAN", "52987", "494" ], [ "Q6ZNW5-1", "GDPP1_HUMAN", "42362", "385" ], [ "Q9NXR8-1", "ING3_HUMAN", "46743", "418" ], [ "Q9C0H2-1", "TTYH3_HUMAN", "57545", "523" ], [ "Q9C0H5-1", "RHG39_HUMAN", "121286", "1083" ], [ "A0A494C0I6-1", "A0A494C0I6_HUMAN", "8392", "67" ], [ "Q4VXU2-1", "PAP1L_HUMAN", "68392", "614" ], [ "Q9C0H6-1", "KLHL4_HUMAN", "80245", "718" ], [ "Q9C0H9-5", "SRCN1_HUMAN", "127105", "1183" ], [ "Q9NXR1-2", "NDE1_HUMAN", "37721", "335" ], [ "Q00537-1", "CDK17_HUMAN", "59582", "523" ], [ "Q00536-1", "CDK16_HUMAN", "55716", "496" ], [ "Q9NXR5-1", "ANR10_HUMAN", "44768", "420" ], [ "Q00532-1", "CDKL1_HUMAN", "41803", "358" ], [ "Q96J66-1", "ABCCB_HUMAN", "154301", "1382" ], [ "O00244-1", "ATOX1_HUMAN", "7402", "68" ], [ "Q9UBM8-1", "MGT4C_HUMAN", "56061", "478" ], [ "Q9H2V7-1", "SPNS1_HUMAN", "56630", "528" ], [ "O00241-1", "SIRB1_HUMAN", "43211", "398" ], [ "O00716-1", "E2F3_HUMAN", "49162", "465" ], [ "Q8IX01-1", "SUGP2_HUMAN", "120207", "1082" ], [ "G5EA27-1", "G5EA27_HUMAN", "11630", "106" ], [ "Q9UBM1-1", "PEMT_HUMAN", "22134", "199" ], [ "A8MTA8-1", "F166B_HUMAN", "30575", "275" ], [ "Q9UBM4-1", "OPT_HUMAN", "37261", "332" ], [ "P24522-1", "GA45A_HUMAN", "18336", "165" ], [ "Q13835-1", "PKP1_HUMAN", "82861", "747" ], [ "Q7Z3T1-1", "OR2W3_HUMAN", "34789", "314" ], [ "A0AVF1-1", "IFT56_HUMAN", "64178", "554" ], [ "P40424-1", "PBX1_HUMAN", "46626", "430" ], [ "P40425-1", "PBX2_HUMAN", "45881", "430" ], [ "P09001-1", "RM03_HUMAN", "38633", "348" ], [ "Q8IZK6-1", "MCLN2_HUMAN", "65942", "566" ], [ "P40429-1", "RL13A_HUMAN", "23577", "203" ], [ "P51991-1", "ROA3_HUMAN", "39595", "378" ], [ "Q13838-1", "DX39B_HUMAN", "48991", "428" ], [ "O00337-1", "S28A1_HUMAN", "71584", "649" ], [ "Q8TDW7-3", "FAT3_HUMAN", "501978", "4557" ], [ "Q5M775-1", "CYTSB_HUMAN", "118585", "1068" ], [ "Q8WTV0-1", "SCRB1_HUMAN", "60878", "552" ], [ "Q9H2I8-1", "LRMDA_HUMAN", "22568", "198" ], [ "A0A075B6S2-1", "KVD29_HUMAN", "13143", "120" ], [ "P08842-1", "STS_HUMAN", "65492", "583" ], [ "P03891-1", "NU2M_HUMAN", "38961", "347" ], [ "Q5VUR7-1", "A20A3_HUMAN", "94108", "823" ], [ "P48960-1", "CD97_HUMAN", "91869", "835" ], [ "P03897-1", "NU3M_HUMAN", "13186", "115" ], [ "P02768-1", "ALBU_HUMAN", "69367", "609" ], [ "A0A075B7E8-1", "A0A075B7E8_HUMAN", "12904", "117" ], [ "P20645-1", "MPRD_HUMAN", "30993", "277" ], [ "P05386-1", "RLA1_HUMAN", "11514", "114" ], [ "P05387-1", "RLA2_HUMAN", "11665", "115" ], [ "P24863-1", "CCNC_HUMAN", "33243", "283" ] ] }, "readme": "Name\n - Human Protein Information (UniProtKB)\n\nVersion\n - 1.5.23\n\nCreated on\n - 2019-01-23T17:21:05.900608\n\nModified on\n - 2020-04-10T11:27:03.338813\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Information dataset contains human [taxid:9606] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_info_uniprotkb.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_info_uniprotkb.csv\n Name: human_protein_info_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.23/reviewed/human_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"2163\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"20656\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"18761\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"20656\"", "downloadurl": "/ln2data/releases/data/v-1.5.23/reviewed/human_protein_info_uniprotkb.csv" }