{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv", 
                    "filename": "human_protein_masterlist.csv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv", 
                    "filename": "rat_protein_masterlist.csv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv", 
                    "filename": "rat_protein_masterlist.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "tsv", 
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/protein_glygen_uniprotkb_xref_mapping.tsv", 
                    "filename": "protein_glygen_uniprotkb_xref_mapping.tsv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/protein_glygen_uniprotkb_xref_mapping.stat.csv", 
                    "filename": "protein_glygen_uniprotkb_xref_mapping.stat.csv"
                }
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        ]
    }, 
    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000410/1.5.23", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "", 
                        "category_name": "species"
                    }, 
                    {
                        "category_value": "Protein", 
                        "category_name": "molecule"
                    }, 
                    {
                        "category_value": "GlyGen-UniProtKB Crossreferences", 
                        "category_name": "tags"
                    }, 
                    {
                        "category_value": "tsv", 
                        "category_name": "file_type"
                    }, 
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }, 
                    {
                        "category_value": "internal", 
                        "category_name": "scope"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "\"https://creativecommons.org/licenses/by/4.0/\"", 
        "name": "GlyGen-UniProtKB Crossreferences Mapping", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }
        ], 
        "created": "2020-04-01T12:08:42.022917", 
        "modified": "2020-04-09T13:57:18.813660", 
        "version": "1.5.23"
    }, 
    "description_domain": {
        "keywords": [
            "UniProtKB", 
            "GlyGen", 
            "crossreferences", 
            "human", 
            "mouse", 
            "rat"
        ], 
        "pipeline_steps": [
            {
                "name": "make-species-agnostic-dataset.py", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv", 
                        "filename": "human_protein_masterlist.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/mouse_protein_masterlist.csv", 
                        "filename": "mouse_protein_masterlist.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/rat_protein_masterlist.csv", 
                        "filename": "rat_protein_masterlist.csv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/protein_glygen_uniprotkb_xref_mapping.tsv", 
                        "filename": "protein_glygen_uniprotkb_xref_mapping.tsv"
                    }
                ], 
                "prerequisite": [], 
                "description": "The script loads the GlyGen's UniProtKB protein accessions for human, mouse and rat species and extracts it into a csv dataset file"
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
            {
                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py", 
                    "filename": "make-species-agnostic-dataset.py"
                }
            }
        ]
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The UniProtKB-GlyGen Crossreferences dataset contains UniProtKB accessions names for human [taxid:9606], mouse [taxid:10090], and rat [taxid:10116] proteins for the purpose of UniProtKB to GlyGen crossreferences. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen"
    ], 
    "etag": "d00fabd67bf10a26868e550641f2f64f", 
    "_id": {
        "$oid": "5e84bc8af5c47b7eedc5aaf0"
    }
}