{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/monocomp.tsv", 
                    "filename": "monocomp.tsv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/glycan_customized_neuac_mammalian_species_annotation.csv", 
                    "filename": "glycan_customized_neuac_mammalian_species_annotation.csv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/glycan_customized_neuac_mammalian_species_annotation.stat.csv", 
                    "filename": "glycan_customized_neuac_mammalian_species_annotation.stat.csv"
                }
            }
        ]
    }, 
    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000342/1.5.23", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Glycan", 
                        "category_name": "molecule"
                    }, 
                    {
                        "category_value": "NeuAc ", 
                        "category_name": "tags"
                    }, 
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }, 
                    {
                        "category_value": "csv", 
                        "category_name": "file_type"
                    }, 
                    {
                        "category_value": "internal", 
                        "category_name": "scope"
                    }, 
                    {
                        "category_value": "Mammalian species annotation", 
                        "category_name": "tags"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "Glycans with NeuAc (Customized table)", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }, 
            {
                "affiliation": "Georgetown University", 
                "contribution": [
                    "authoredBy"
                ], 
                "name": "Nathan Edwards", 
                "email": "nje5@georgetown.edu"
            }
        ], 
        "created": "2020-03-02T14:23:10.848312", 
        "modified": "2020-03-04T11:03:35.758458", 
        "version": "1.5.23"
    }, 
    "description_domain": {
        "keywords": [
            "Glycan", 
            "GlyTouCan Accession", 
            "NeuAc", 
            "Mammalian species annotation "
        ], 
        "pipeline_steps": [
            {
                "name": "manual", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/monocomp.tsv", 
                        "filename": "monocomp.tsv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/species.tsv", 
                        "filename": "species.tsv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "http://data.glygen.org/ln2wwwdata/reviewed/glycan_customized_neuac_mammalian_species_annotation.csv", 
                        "filename": "glycan_customized_neuac_mammalian_species_annotation.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "Based on the submitted user query (different sialic acid-containing mammalian glycan structures reported in your database), the  list of glycans that have \"NeuAc\" were from input file 1 (monocomp.tsv;column:5 ;filter:not \"0\"). The selected GlyTouCan accessions were mapped to input file 2 (glycan_species.tsv) where the value is \"true\".  "
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
            {
                "version": "-", 
                "name": "LINUX", 
                "uri": {
                    "uri": ""
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "N/A", 
                    "filename": "N/A"
                }
            }
        ]
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The dataset provides glycans that have atleast one \"NeuAc\" residue in the current GlyGen dataset (https://data.glygen.org/GLYDS000281). The GlyTouCan accessions included in this list have mammalian species annotation (human/mouse/rat) through direct TaxID annotation and/or inferred via subsumption. This table was customized based on a GlyGen user query submitted through GlyGen help on Feb 17th 2020."
    ], 
    "etag": "ed45a6f1e44a9c1f52f5e8647ecaf8a2", 
    "_id": {
        "$oid": "5e5d5d1ef5c47b2bacc2a509"
    }
}