{ "uniprot_canonical_ac": "A0JPP0-1", "sequence": { "header": "tr|A0JPP0-1|A0JPP0_RAT Isoform 1 of Similar to ubiquilin 1 isoform 2 OS=Rattus norvegicus OX=10116 GN=RGD1562433 PE=1 SV=1 CANONICAL=A0JPP0-1", "length": 510, "sequence": "MARAREEAGDSQLVSGRESSSRIIRVSVKTPQDCQEFFLAENSNVHRFKKQISKYLHCDTDRLVLIYTGKILQDQDILSQRGILDGSTVHAVVRSRLKGSACTGTLAGPTGHCTHRSEPSVKLGRLARSSPDLADFFSQLVQLLPAAPESVVQFLEDPLIQGLANEKQANGVHIPESSKTVQKRDPALKFPETFQKPVQQQEVLQEHKQRLEALKAVPGGDNAMHPSCSDIQQAMLSTLASLVASKGHISGSDLCRGEANNAHSSLDTTTIPATSAPVRTLAQEVSTGGVTQVKGLVSSQAGSGCRQGMLDLHPSSETPSQESQQPVEKVPLTNQLRLSPSVLRRALTVLQQNPSLAHQLATGSPLLHHIPLLPILTNPRALQALLQIEEGLMILSREVPELGPLFRESAKPRGARGAQETRGRRQAHREDTSQHSLAFLQLFHSLASACSQSTQTALPASPFTEDRYQQELEELKALGFANHDANLQALVATDGDIHAAIEKLLGAPQD" }, "uniprot_id": "A0JPP0_RAT", "enzyme_annotation": [], "synonyms": { "protein": { "refseq": [ "ubiquilin-3" ], "uniprotkb": [ "Similar to ubiquilin 1 isoform 2", "Similar to ubiquilin 1 isoform 2 (Predicted)" ] }, "gene": { "refseq": [ "RGD1562433" ], "uniprotkb": [ "RGD1562433", "RGD1562433_predicted", "rCG_39636" ] } }, "keywords": [], "species": [ { "evidence": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0", "id": "A0JPP0", "database": "UniProtKB" } ], "name": "Rattus norvegicus", "taxid": 10116 } ], "recommendedname": { "full": "Similar to ubiquilin 1 isoform 2; Similar to ubiquilin 1 isoform 2 (Predicted)." }, "publication": [ { "title": "Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/22673903", "journal": "Nat. Commun.", "evidence": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0/publications", "id": "A0JPP0", "database": "UniProtKB" } ], "authors": "Olsen J.V., Lage K., Secher A., Dmytriyev A., Lundby A., Lundby C., Nordsborg N.B.", "date": "2012", "pmid": "22673903" }, { "title": "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12477932", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001071146.1", "id": "NP_001071146.1", "database": "RefSeq" } ], "authors": "Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA", "date": "2002", "pmid": "12477932" } ], "glycosylation": [], "mutation": [], "isoforms": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0#A0JPP0-1", "isoform_ac": "A0JPP0-1", "locus": { "end_pos": 169319372, "start_pos": 169320901, "chromosome": "1", "evidence": [ { "url": "https://www.ensembl.org/id/ENSRNOT00000055216", "id": "ENSRNOT00000055216", "database": "Ensembl Transcript" }, { "url": "https://www.ensembl.org/id/ENSRNOP00000052090", "id": "ENSRNOP00000052090", "database": "Ensembl Peptide" } ] }, "sequence": { "header": "tr|A0JPP0-1|A0JPP0_RAT Isoform 1 of Similar to ubiquilin 1 isoform 2 OS=Rattus norvegicus OX=10116 GN=RGD1562433 PE=1 SV=1 CANONICAL=A0JPP0-1", "length": 510, "sequence": "MARAREEAGDSQLVSGRESSSRIIRVSVKTPQDCQEFFLAENSNVHRFKKQISKYLHCDTDRLVLIYTGKILQDQDILSQRGILDGSTVHAVVRSRLKGSACTGTLAGPTGHCTHRSEPSVKLGRLARSSPDLADFFSQLVQLLPAAPESVVQFLEDPLIQGLANEKQANGVHIPESSKTVQKRDPALKFPETFQKPVQQQEVLQEHKQRLEALKAVPGGDNAMHPSCSDIQQAMLSTLASLVASKGHISGSDLCRGEANNAHSSLDTTTIPATSAPVRTLAQEVSTGGVTQVKGLVSSQAGSGCRQGMLDLHPSSETPSQESQQPVEKVPLTNQLRLSPSVLRRALTVLQQNPSLAHQLATGSPLLHHIPLLPILTNPRALQALLQIEEGLMILSREVPELGPLFRESAKPRGARGAQETRGRRQAHREDTSQHSLAFLQLFHSLASACSQSTQTALPASPFTEDRYQQELEELKALGFANHDANLQALVATDGDIHAAIEKLLGAPQD" } } ], "pathway": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?rno:499222", "resource": "KEGG Pathway", "id": "rno:499222", "name": "" } ], "function": [], "orthologs": [ { "uniprot_canonical_ac": "Q9D4I8-1", "protein_name": "Ubiquilin 5; MCG53927.", "sequence": { "length": 510, "sequence": "MARAREEAGDSQLVSGREPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHLKGSACTGTLVGPTGQYTHRSEPSAKLGRLAGTSPDLADFFSQRVQLLPAAPESVVQLLEDPLIQGLANEKHANGVHIPETSKTVQKRDPALKFPETLQKPAQSQEVLQEHKQRLEALKAVPGGDNAMHPSCSDIHQVMLSTLALLVASKGHISALELCRGETNNAHSSSDPTTIPATSPLVRTLAQEVSTGGVSQVKGIVSSQASLGCRPGMLDLHSGSDIPCQESQQPLEKVPLTCQPRLSPCVLRLALTVLQQNPSLAHQLATGSPLLHHLPLLPILTNPRALQALLQIEEGLQILSREVPELGPLFRDSAKPRGARGAQETRGRRQAHREDTTQHSLAFLQLFHSLARACSQSSQTALPTSLFTEGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGAPQD" }, "evidence": [ { "url": "https://omabrowser.org/oma/group/A0JPP0/", "id": "A0JPP0", "database": "OMA" }, { "url": "http://www.informatics.jax.org/homology/78030", "id": "78030", "database": "MGI" } ], "organism": "Mus musculus", "tax_id": 10090 } ], "refseq": { "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001071146.1", "ac": "NP_001071146.1", "name": "ubiquilin-3.", "summary": "" }, "go_annotation": { "categories": [ { "go_terms": [ { "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031593", "evidence": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0", "id": "A0JPP0", "database": "UniProtKB" } ], "name": "polyubiquitin modification-dependent protein binding", "id": "GO:0031593" } ], "total": 1, "name": "Molecular Function" }, { "go_terms": [ { "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0", "id": "A0JPP0", "database": "UniProtKB" } ], "name": "cytosol", "id": "GO:0005829" } ], "total": 1, "name": "Cellular Component" }, { "go_terms": [ { "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0", "id": "A0JPP0", "database": "UniProtKB" } ], "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511" } ], "total": 1, "name": "Biological Process" } ] }, "site_annotation": [], "crossref": [ { "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001071146.1", "id": "NP_001071146.1", "database": "RefSeq" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?rno:499222", "id": "rno:499222", "database": "KEGG Pathway" }, { "url": "https://bgee.org/?page=gene&gene_id=ENSRNOG00000036807", "id": "ENSRNOG00000036807", "database": "Bgee" }, { "url": "https://omabrowser.org/oma/group/VKTPQDC/", "id": "VKTPQDC", "database": "OMA" }, { "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "id": "IPR029071", "database": "InterPro" }, { "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "id": "IPR000626", "database": "InterPro" }, { "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "id": "IPR009060", "database": "InterPro" }, { "url": "https://www.ebi.ac.uk/interpro/entry/IPR015940", "id": "IPR015940", "database": "InterPro" }, { "url": "https://www.ebi.ac.uk/interpro/entry/IPR015496", "id": "IPR015496", "database": "InterPro" }, { "url": "http://pfam.xfam.org/family/PF00240", "id": "PF00240", "database": "Pfam" }, { "url": "http://pfam.xfam.org/family/PF00627", "id": "PF00627", "database": "Pfam" }, { "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10677", "id": "PTHR10677", "database": "PANTHER" }, { "url": "https://www.ncbi.nlm.nih.gov/gene/499222", "id": "499222", "database": "GeneID" }, { "url": "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=1562433", "id": "1562433", "database": "RGD" } ], "expression_disease": [], "uniprot_ac": "A0JPP0", "disease": [], "mass": { "monoisotopic_mass": 55229.0, "chemical_mass": 55229.0 }, "expression_tissue": [], "gene": [ { "url": "https://www.uniprot.org/uniprot/A0JPP0", "name": "RGD1562433; RGD1562433_predicted; rCG_39636.", "locus": { "end_pos": 169319200, "start_pos": 169321075, "chromosome": "1", "evidence": [ { "url": "https://www.ensembl.org/id/ENSRNOG00000036807", "id": "ENSRNOG00000036807", "database": "Ensembl Gene" } ] } } ] }