{ "bcoid": "GLY_000410", "title": "GlyGen-UniProtKB Crossreferences Mapping", "description": "The UniProtKB-GlyGen Crossreferences dataset contains UniProtKB accessions names for human [taxid:9606], ...", "filename": "protein_glygen_uniprotkb_xref_mapping.tsv", "filetype": "tsv", "categories": { "molecule": "Protein", "tags": "GlyGen-UniProtKB Crossreferences", "file_type": "tsv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9DB34...", "Q9DB34..." ], [ "Q9WVQ1...", "Q9WVQ1..." ] ], "headers": [ "uniprotkb_pr...", "glygen_unipr..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_primary_accession" }, { "type": "string", "label": "glygen_uniprotkb_accession" }, { "type": "string", "label": "organism_name" } ], [ "Q9DB34", "Q9DB34", "Mus musculus" ], [ "Q9WVQ1", "Q9WVQ1", "Mus musculus" ], [ "Q63538", "Q63538", "Rattus norvegicus" ], [ "F1LYV1", "F1LYV1", "Rattus norvegicus" ], [ "P24387", "P24387", "Homo sapiens" ], [ "P60510", "P60510", "Homo sapiens" ], [ "Q6AXN8", "Q6AXN8", "Rattus norvegicus" ], [ "Q62267", "Q62267", "Mus musculus" ], [ "Q9BYT8", "Q9BYT8", "Homo sapiens" ], [ "Q9UBU7", "Q9UBU7", "Homo sapiens" ], [ "Q9HB96", "Q9HB96", "Homo sapiens" ], [ "D4A4J0", "D4A4J0", "Rattus norvegicus" ], [ "H7C350", "H7C350", "Homo sapiens" ], [ "P02765", "P02765", "Homo sapiens" ], [ "Q66H41", "Q66H41", "Rattus norvegicus" ], [ "A0A0G2JZA8", "A0A0G2JZA8", "Rattus norvegicus" ], [ "A6NI86", "A6NI86", "Homo sapiens" ], [ "Q9Z137", "Q9Z137", "Rattus norvegicus" ], [ "P17431", "P17431", "Rattus norvegicus" ], [ "Q13228", "Q13228", "Homo sapiens" ], [ "Q9CQV4", "Q9CQV4", "Mus musculus" ], [ "D4A6I7", "D4A6I7", "Rattus norvegicus" ], [ "O54842", "O54842", "Rattus norvegicus" ], [ "Q9BZW8", "Q9BZW8", "Homo sapiens" ], [ "D3YTW8", "D3YTW8", "Mus musculus" ], [ "B0K010", "B0K010", "Rattus norvegicus" ], [ "Q63086", "Q63086", "Rattus norvegicus" ], [ "Q8CGC7", "Q8CGC7", "Mus musculus" ], [ "D3ZKN0", "D3ZKN0", "Rattus norvegicus" ], [ "Q9CWM4", "Q9CWM4", "Mus musculus" ], [ "P20766", "P20766", "Rattus norvegicus" ], [ "D4A8M3", "D4A8M3", "Rattus norvegicus" ], [ "Q6P7D7", "Q6P7D7", "Rattus norvegicus" ], [ "A0A140T8N3", "A0A140T8N3", "Mus musculus" ], [ "O15394", "O15394", "Homo sapiens" ], [ "G5E8K6", "G5E8K6", "Mus musculus" ], [ "D4A7T1", "D4A7T1", "Rattus norvegicus" ], [ "Q9HC23", "Q9HC23", "Homo sapiens" ], [ "B1AXS0", "B1AXS0", "Mus musculus" ], [ "Q8BT07", "Q8BT07", "Mus musculus" ], [ "O75019", "O75019", "Homo sapiens" ], [ "Q4V8G8", "Q4V8G8", "Rattus norvegicus" ], [ "O70490", "O70490", "Rattus norvegicus" ], [ "P46153", "P46153", "Rattus norvegicus" ], [ "Q8VES9", "Q8VES9", "Mus musculus" ], [ "Q8C2A2", "Q8C2A2", "Mus musculus" ], [ "B2RZ82", "B2RZ82", "Rattus norvegicus" ], [ "Q08357", "Q08357", "Homo sapiens" ], [ "F1MAS1", "F1MAS1", "Rattus norvegicus" ], [ "A1A5R8", "A1A5R8", "Rattus norvegicus" ], [ "Q3UEP4", "Q3UEP4", "Mus musculus" ], [ "F1MAF8", "F1MAF8", "Rattus norvegicus" ], [ "Q63185", "Q63185", "Rattus norvegicus" ], [ "Q15034", "Q15034", "Homo sapiens" ], [ "D3ZH27", "D3ZH27", "Rattus norvegicus" ], [ "P08046", "P08046", "Mus musculus" ], [ "Q5F259", "Q5F259", "Mus musculus" ], [ "D3ZTY9", "D3ZTY9", "Rattus norvegicus" ], [ "O14519", "O14519", "Homo sapiens" ], [ "P56388", "P56388", "Mus musculus" ], [ "J3QN89", "J3QN89", "Mus musculus" ], [ "Q8N5L8", "Q8N5L8", "Homo sapiens" ], [ "Q9EPK6", "Q9EPK6", "Mus musculus" ], [ "Q9Z1S7", "Q9Z1S7", "Rattus norvegicus" ], [ "Q8N695", "Q8N695", "Homo sapiens" ], [ "Q96NJ6", "Q96NJ6", "Homo sapiens" ], [ "P49771", "P49771", "Homo sapiens" ], [ "Q9R2B6", "Q9R2B6", "Mus musculus" ], [ "B3EY84", "B3EY84", "Rattus norvegicus" ], [ "D3ZGX2", "D3ZGX2", "Rattus norvegicus" ], [ "D3ZQX3", "D3ZQX3", "Rattus norvegicus" ], [ "P35251", "P35251", "Homo sapiens" ], [ "A0A0G2JTI7", "A0A0G2JTI7", "Rattus norvegicus" ], [ "D3Z8C2", "D3Z8C2", "Rattus norvegicus" ], [ "D4A5F3", "D4A5F3", "Rattus norvegicus" ], [ "A7VMS2", "A7VMS2", "Mus musculus" ], [ "Q66HC7", "Q66HC7", "Rattus norvegicus" ], [ "Q9Y5U9", "Q9Y5U9", "Homo sapiens" ], [ "A0A2R8YCJ5", "A0A2R8YCJ5", "Homo sapiens" ], [ "Q02395", "Q02395", "Mus musculus" ], [ "P0DP76", "P0DP76", "Rattus norvegicus" ], [ "Q96IZ6", "Q96IZ6", "Homo sapiens" ], [ "D3ZXT7", "D3ZXT7", "Rattus norvegicus" ], [ "F7F4B1", "F7F4B1", "Rattus norvegicus" ] ] }, "readme": "Name\n - GlyGen-UniProtKB Crossreferences Mapping\n\nVersion\n - 1.5.18\n\nCreated on\n - 2020-04-01T12:08:42.022917\n\nModified on\n - 2020-04-09T13:57:18.813660\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The UniProtKB-GlyGen Crossreferences dataset contains UniProtKB accessions names for human [taxid:9606], mouse [taxid:10090], and rat [taxid:10116] proteins for the purpose of UniProtKB to GlyGen crossreferences. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB\n - GlyGen\n - crossreferences\n - human\n - mouse\n - rat\n\n Pipeline Steps\n - Step-1: The script loads the GlyGen's UniProtKB protein accessions for human, mouse and rat species and extracts it into a csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: protein_glygen_uniprotkb_xref_mapping.tsv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/protein_glygen_uniprotkb_xref_mapping.tsv\n Name: protein_glygen_uniprotkb_xref_mapping.stat.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/protein_glygen_uniprotkb_xref_mapping.stat.csv\n\nFields", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/protein_glygen_uniprotkb_xref_mapping.tsv" }