{ "bcoid": "GLY_000391", "title": "Mouse Gene Symbols (UniProtKB)", "description": "The Mouse Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for mouse [taxid:10090] ...", "filename": "mouse_protein_genenames_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Protein", "tags": "Gene Symbols", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "Tm9sf4..." ], [ "Q8BH27-1...", "Megf9..." ] ], "headers": [ "uniprotkb_ca...", "gene_symbol_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "gene_symbol_recommended" }, { "type": "string", "label": "gene_symbol_alternative" }, { "type": "string", "label": "orf_name" } ], [ "Q8BH24-1", "Tm9sf4", "Kiaa0255", "" ], [ "Q8BH27-1", "Megf9", "Egfl5", "" ], [ "Q8BH27-1", "Megf9", "Kiaa0818", "" ], [ "Q8BH26-1", "Tmem251", "", "" ], [ "Q8VF69-1", "Olfr223", "", "" ], [ "Q9JHR7-1", "Ide", "", "" ], [ "Q8VF63-1", "Olfr881", "", "" ], [ "Q8VF66-1", "Olfr469", "Mor204-21", "" ], [ "Q8VF65-1", "Olfr470", "Mor204-22", "" ], [ "Q8VF64-1", "Olfr883", "", "" ], [ "B2RXV4-1", "Flvcr1", "Mfsd7b", "" ], [ "E9Q3P4-1", "Cenpf", "", "" ], [ "A0A087WRQ3-1", "Trav1", "", "" ], [ "Q9CXG9-1", "Phf19", "Pcl3", "" ], [ "Q07968-1", "F13b", "Cf13b", "" ], [ "A5H0M4-1", "Poteg", "Gsarp1", "" ], [ "Q9CXG3-1", "Ppil4", "", "" ], [ "B1AQ89-1", "Gm11555", "", "" ], [ "B1AQ87-1", "Gm14190", "", "" ], [ "B1AQ85-1", "Krtap4-2", "", "" ], [ "A0A1B0GST0-1", "Olfr566", "", "" ], [ "Q3UU21-1", "Gm7534", "EG665186", "" ], [ "P01942-1", "Hba", "Hba-a1", "" ], [ "P03899-1", "Mtnd3", "Nd3", "" ], [ "P03899-1", "Mtnd3", "mt-Nd3", "" ], [ "O35153-1", "Bet1l", "Gs15", "" ], [ "Q9QYH9-1", "Tnfsf14", "Light", "" ], [ "P52479-1", "Usp10", "Kiaa0190", "" ], [ "P52479-1", "Usp10", "Ode-1", "" ], [ "P52479-1", "Usp10", "Uchrp", "" ], [ "B1AXU1-1", "Gm6812", "", "mCG_15151" ], [ "P02762-1", "Mup6", "", "" ], [ "Q9QYH6-1", "Maged1", "Nrage", "" ], [ "Q3SXJ3-1", "Olfr1209", "", "" ], [ "Q08AU7-1", "Myadml2", "", "" ], [ "Q5EBH1-1", "Rassf5", "Nore1", "" ], [ "Q5EBH1-1", "Rassf5", "Rapl", "" ], [ "A0A087WSM5-1", "Gm29049", "", "" ], [ "Q61409-1", "Pde3b", "", "" ], [ "A2AVK5-1", "Olfr1234", "", "" ], [ "Q80YU0-1", "Abhd16b", "", "" ], [ "Q61400-1", "Ceacam10", "Cea10", "" ], [ "Q61406-1", "Cfhr1", "Cfhl1", "" ], [ "Q5SRT8-1", "Ccnjl", "Gm877", "" ], [ "A0A140LIA7-1", "Gm29797", "", "" ], [ "P70419-1", "Galnt3", "", "" ], [ "Q9EP78-1", "Chst7", "Gst5", "" ], [ "Q9EP79-1", "Vmn1r52", "V1ra7", "" ], [ "Q3URK3-1", "Tet1", "Cxxc6", "" ], [ "Q3URK3-1", "Tet1", "Kiaa1676", "" ], [ "Q9EP73-1", "Cd274", "B7h1", "" ], [ "Q9EP73-1", "Cd274", "Pdcd1l1", "" ], [ "Q9EP73-1", "Cd274", "Pdcd1lg1", "" ], [ "Q9EP73-1", "Cd274", "Pdl1", "" ], [ "Q9EP71-1", "Rai14", "Kiaa1334", "" ], [ "Q9EP71-1", "Rai14", "Norpeg", "" ], [ "Q9EP75-1", "Cyp4f14", "", "" ], [ "Q3URK1-1", "Ccdc190", "", "" ], [ "Q8BYZ1-1", "Abi3", "Nesh", "" ], [ "S4R213-1", "Lactbl1", "", "" ], [ "P53702-1", "Hccs", "Cchl", "" ], [ "Q8R349-1", "Cdc16", "Anapc6", "" ], [ "Q8R344-1", "Ccdc12", "", "" ], [ "O08911-1", "Mapk12", "Sapk3", "" ], [ "Q80WC9-1", "Aasdh", "U26", "" ], [ "Q80WC9-1", "Aasdh", "Acsf4", "" ], [ "O08912-1", "Galnt1", "", "" ], [ "O08915-1", "Aip", "", "" ], [ "O08914-1", "Faah", "Faah1", "" ], [ "O08917-1", "Flot1", "", "" ], [ "Q80WC3-1", "Tnrc18", "Kiaa1856", "" ], [ "Q80WC3-1", "Tnrc18", "Zfp469", "" ], [ "O08918-1", "Ccng2", "", "" ], [ "Q80WC1-1", "Ubn2", "Kiaa2030", "" ], [ "Q80WC7-1", "Agfg2", "Hrbl", "" ], [ "Q80WC7-1", "Agfg2", "Rabr", "" ], [ "Q9JHY4-1", "Wfdc15b", "Swam1", "" ], [ "Q9JHY4-1", "Wfdc15b", "Wfdc15", "" ], [ "Q8R3V5-4", "Sh3glb2", "Kiaa1848", "" ], [ "Q91ZK4-1", "Dmbx1", "Cdmx", "" ], [ "Q91ZK4-1", "Dmbx1", "Mbx", "" ], [ "Q91ZK4-1", "Dmbx1", "Otx3", "" ], [ "Q91ZK4-1", "Dmbx1", "PaxB", "" ], [ "Q91ZK0-1", "Tfap2d", "Tcfap2d", "" ] ] }, "readme": "Name\n - Mouse Gene Symbols (UniProtKB)\n\nVersion\n - 1.5.18\n\nCreated on\n - 2020-03-15T13:08:14.330050\n\nModified on\n - 2020-03-16T16:34:14.974060\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for mouse [taxid:10090] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_genenames_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_genenames_uniprotkb.csv\n Name: mouse_protein_genenames_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_genenames_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"21616\"\n Name: \"orf_name\"\n Description: \"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\n Unique Values: \"1508\"\n Name: \"gene_symbol_recommended\"\n Description: \"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\n Unique Values: \"21643\"\n Name: \"gene_symbol_alternative\"\n Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n Unique Values: \"15453\"", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_genenames_uniprotkb.csv" }