{
    "bcoid": "GLY_000342",
    "title": "Glycans with NeuAc (Customized table)",
    "description": "The dataset provides glycans that have atleast one \"NeuAc\" residue in the current GlyGen dataset (https://data.glygen.org/GLYDS000281). ...",
    "filename": "glycan_customized_neuac_mammalian_species_annotation.csv",
    "filetype": "csv",
    "categories": {
        "molecule": "Glycan",
        "tags": "Mammalian species annotation",
        "status": "Reviewed",
        "file_type": "csv",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "G00053MO"
            ],
            [
                "G00054MO"
            ]
        ],
        "headers": [
            "glytoucan_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "G00053MO"
            ],
            [
                "G00054MO"
            ],
            [
                "G00057LF"
            ],
            [
                "G00063MO"
            ],
            [
                "G00065MO"
            ],
            [
                "G00087BY"
            ],
            [
                "G00089VH"
            ],
            [
                "G00105XF"
            ],
            [
                "G00106LE"
            ],
            [
                "G00116QX"
            ],
            [
                "G00227RN"
            ],
            [
                "G00231WL"
            ],
            [
                "G00232ED"
            ],
            [
                "G00257UQ"
            ],
            [
                "G00318AV"
            ],
            [
                "G00320ZP"
            ],
            [
                "G00370EI"
            ],
            [
                "G00390GQ"
            ],
            [
                "G00413UF"
            ],
            [
                "G00430ZK"
            ],
            [
                "G00449DS"
            ],
            [
                "G00450EO"
            ],
            [
                "G00451UT"
            ],
            [
                "G00459BD"
            ],
            [
                "G00461RR"
            ],
            [
                "G00520NI"
            ],
            [
                "G00553AN"
            ],
            [
                "G00641XC"
            ],
            [
                "G00646SN"
            ],
            [
                "G00659GQ"
            ],
            [
                "G00666EC"
            ],
            [
                "G00672PE"
            ],
            [
                "G00706AL"
            ],
            [
                "G00774OZ"
            ],
            [
                "G00794UV"
            ],
            [
                "G00800WJ"
            ],
            [
                "G00814BW"
            ],
            [
                "G00828QE"
            ],
            [
                "G00830CM"
            ],
            [
                "G00891GP"
            ],
            [
                "G00910WD"
            ],
            [
                "G00912UN"
            ],
            [
                "G00915DI"
            ],
            [
                "G00927ER"
            ],
            [
                "G00955WX"
            ],
            [
                "G00970CP"
            ],
            [
                "G00975ZH"
            ],
            [
                "G00987AB"
            ],
            [
                "G00994CC"
            ],
            [
                "G01010HI"
            ],
            [
                "G01031EZ"
            ],
            [
                "G01040ZV"
            ],
            [
                "G01044ZK"
            ],
            [
                "G01178HS"
            ],
            [
                "G01203BZ"
            ],
            [
                "G01254YI"
            ],
            [
                "G01269WV"
            ],
            [
                "G01282UD"
            ],
            [
                "G01296LJ"
            ],
            [
                "G01303GF"
            ],
            [
                "G01310VF"
            ],
            [
                "G01325OU"
            ],
            [
                "G01351CD"
            ],
            [
                "G01351UQ"
            ],
            [
                "G01357QI"
            ],
            [
                "G01361CV"
            ],
            [
                "G01445XB"
            ],
            [
                "G01450UB"
            ],
            [
                "G01453HD"
            ],
            [
                "G01455VM"
            ],
            [
                "G01465MJ"
            ],
            [
                "G01506GC"
            ],
            [
                "G01525UQ"
            ],
            [
                "G01541ZK"
            ],
            [
                "G01543ZX"
            ],
            [
                "G01556OR"
            ],
            [
                "G01563KC"
            ],
            [
                "G01587DQ"
            ],
            [
                "G01604EO"
            ],
            [
                "G01605NF"
            ],
            [
                "G01606CH"
            ],
            [
                "G01614ZM"
            ],
            [
                "G01650CJ"
            ],
            [
                "G01650EU"
            ]
        ]
    },
    "readme": "Name\n   - Glycans with NeuAc (Customized table)\n\nVersion\n   - 1.5.18\n\nCreated on\n  - 2020-03-02T14:23:10.848312\n\nModified on\n   - 2020-03-04T11:03:35.758458\n\nCreated by\n   - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides glycans that have atleast one \"NeuAc\" residue in the current GlyGen dataset (https://data.glygen.org/GLYDS000281). The GlyTouCan accessions included in this list have mammalian species annotation (human/mouse/rat) through direct TaxID annotation and/or inferred via subsumption. This table was customized based on a GlyGen user query submitted through GlyGen help on Feb 17th 2020.\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - NeuAc\n   - Mammalian species annotation \n\n   Pipeline Steps\n   - Step-1: Based on the submitted user query (different sialic acid-containing mammalian glycan structures reported in your database), the  list of glycans that have \"NeuAc\" were from input file 1 (monocomp.tsv;column:5 ;filter:not \"0\"). The selected GlyTouCan accessions were mapped to input file 2 (glycan_species.tsv) where the value is \"true\".  \n\nExecution Domain\n   Scripts   - N/A\n\n\n   Software Prerequisites\n      Name: LINUX\n      Version: -\n      URI: \n\nI/O Domain\n   Input Subdomain\n      Name: monocomp.tsv\n      URI: https://data.glygen.org/ln2wwwdata/source/monocomp.tsv\n   Output Subdomain\n      Name: glycan_customized_neuac_mammalian_species_annotation.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_customized_neuac_mammalian_species_annotation.csv\n      Name: glycan_customized_neuac_mammalian_species_annotation.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_customized_neuac_mammalian_species_annotation.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"5106\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/glycan_customized_neuac_mammalian_species_annotation.csv"
}