{ "bcoid": "GLY_000297", "title": "Glycan Xref ChEBI [KEGG ID] ", "description": "The dataset provides cross-references to ChEBI Id's for the associated glycan (GlyTouCan Accession) based ...", "filename": "glycan_xref_chebi_from_kegg.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "ChEBI cross-references (KEGG GLYCAN)", "status": "Reviewed", "file_type": "csv", "scope": "external" }, "minitable": { "content": [ [ "G00031MO...", "16117..." ], [ "G00031MO...", "62464..." ] ], "headers": [ "glytoucan_ac...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "G00031MO", "16117", "ChEBI" ], [ "G00031MO", "62464", "ChEBI" ], [ "G00033MO", "15876", "ChEBI" ], [ "G00035MO", "16250", "ChEBI" ], [ "G00037MO", "16478", "ChEBI" ], [ "G00039MO", "145577", "ChEBI" ], [ "G00047MO", "62265", "ChEBI" ], [ "G00049MO", "17292", "ChEBI" ], [ "G00050MO", "28743", "ChEBI" ], [ "G00059MO", "18313", "ChEBI" ], [ "G00061MO", "145578", "ChEBI" ], [ "G00140XB", "146055", "ChEBI" ], [ "G00175GT", "146060", "ChEBI" ], [ "G00306VT", "146043", "ChEBI" ], [ "G00435KX", "146069", "ChEBI" ], [ "G00461ZN", "146071", "ChEBI" ], [ "G00483IX", "146076", "ChEBI" ], [ "G00558IW", "146084", "ChEBI" ], [ "G00568LN", "146086", "ChEBI" ], [ "G00594CD", "146089", "ChEBI" ], [ "G00631XZ", "146092", "ChEBI" ], [ "G00667RI", "146098", "ChEBI" ], [ "G00709ZM", "146107", "ChEBI" ], [ "G00899CT", "146122", "ChEBI" ], [ "G00936LV", "146128", "ChEBI" ], [ "G01055WR", "16405", "ChEBI" ], [ "G01132FQ", "62973", "ChEBI" ], [ "G01187XC", "62287", "ChEBI" ], [ "G01650PH", "61357", "ChEBI" ], [ "G01767JJ", "36528", "ChEBI" ], [ "G02149VR", "82608", "ChEBI" ], [ "G02240AO", "61864", "ChEBI" ], [ "G02594WS", "61578", "ChEBI" ], [ "G02657AK", "28648", "ChEBI" ], [ "G02729OV", "62678", "ChEBI" ], [ "G03006JP", "59249", "ChEBI" ], [ "G03067VG", "145579", "ChEBI" ], [ "G03116ET", "27445", "ChEBI" ], [ "G03277YI", "145580", "ChEBI" ], [ "G03361KC", "141168", "ChEBI" ], [ "G04220HB", "145883", "ChEBI" ], [ "G04616ST", "27707", "ChEBI" ], [ "G05026ZL", "12427", "ChEBI" ], [ "G05108UT", "145884", "ChEBI" ], [ "G05189JQ", "145581", "ChEBI" ], [ "G06000DZ", "60948", "ChEBI" ], [ "G06239NA", "17103", "ChEBI" ], [ "G06850AE", "62575", "ChEBI" ], [ "G07982RO", "28681", "ChEBI" ], [ "G08520NM", "60625", "ChEBI" ], [ "G08855PJ", "62667", "ChEBI" ], [ "G08926IP", "62657", "ChEBI" ], [ "G09165XB", "28053", "ChEBI" ], [ "G09342SH", "61613", "ChEBI" ], [ "G09546QO", "17505", "ChEBI" ], [ "G09552LA", "63231", "ChEBI" ], [ "G09741DV", "62491", "ChEBI" ], [ "G09776OJ", "62658", "ChEBI" ], [ "G09955UR", "61315", "ChEBI" ], [ "G10430NG", "61762", "ChEBI" ], [ "G10503MP", "60745", "ChEBI" ], [ "G13040AD", "62673", "ChEBI" ], [ "G13636IT", "28691", "ChEBI" ], [ "G14371GV", "145583", "ChEBI" ], [ "G14974EY", "62270", "ChEBI" ], [ "G15059WI", "90155", "ChEBI" ], [ "G15305CQ", "29111", "ChEBI" ], [ "G16612QG", "60931", "ChEBI" ], [ "G17077FL", "59212", "ChEBI" ], [ "G17108EX", "62453", "ChEBI" ], [ "G18375DW", "64025", "ChEBI" ], [ "G18625KA", "27515", "ChEBI" ], [ "G19524AS", "62654", "ChEBI" ], [ "G20044TD", "37986", "ChEBI" ], [ "G20569LL", "2795", "ChEBI" ], [ "G21269SH", "63141", "ChEBI" ], [ "G21856LC", "27938", "ChEBI" ], [ "G21929KG", "60945", "ChEBI" ], [ "G22689CV", "62580", "ChEBI" ], [ "G22768VO", "62098", "ChEBI" ], [ "G23347CS", "88277", "ChEBI" ], [ "G24034CH", "145595", "ChEBI" ], [ "G24464VD", "76821", "ChEBI" ], [ "G24499XE", "63013", "ChEBI" ] ] }, "readme": "Name\n - Glycan Xref ChEBI [KEGG ID] \n\nVersion\n - 1.5.18\n\nCreated on\n - 2019-11-13T17:04:38.641719\n\nModified on\n - 2019-11-13T17:21:46.590334\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides cross-references to ChEBI Id's for the associated glycan (GlyTouCan Accession) based on the GlyTouCan to KEGG glycan ID mapping . The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/; https://pubchem.ncbi.nlm.nih.gov/;https://www.ebi.ac.uk/chebi/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - ChEBI (KEGG Glycan ID)\n - Cross-references\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: A python script was generated to use the GlyTouCan Ac. to KEGG glycan mapping file to extract the KEGG Glycan ID to ChEBI ID mapping from the ChEBI FTP download file.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: database_accession_2019_02_07_03_58_16.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/database_accession_2019_02_07_03_58_16.tsv\n Name: glycan_xref_kegg.csv\n URI: https://data.glygen.org/ln2wwwdata/source/glycan_xref_kegg.csv\n Output Subdomain\n Name: glycan_xref_chebi_from_kegg.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_xref_chebi_from_kegg.csv\n Name: glycan_xref_chebi_from_kegg.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_xref_chebi_from_kegg.stat.csv\n\nFields\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"310\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"303\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/glycan_xref_chebi_from_kegg.csv" }