{ "bcoid": "GLY_000035", "title": "Human Protein Citations (UniProtKB)", "description": "The Human Protein Citations dataset contains publication information for human [taxid:9606] UniProtKB ...", "filename": "human_protein_citations_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "10087985..." ], [ "P30613-1...", "10772876..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "P30613-1", "10087985", "Hematologically important mutations: red cell pyruvate kinase (2nd update).", "Blood Cells Mol. Dis.", "1998", "Bianchi P., Zanella A., Baronciani L." ], [ "P30613-1", "10772876", "Hematologically important mutations: red cell pyruvate kinase (third update).", "Blood Cells Mol. Dis.", "2000", "Bianchi P., Zanella A." ], [ "P30613-1", "11328279", "Molecular characterization of the PK-LR gene in sixteen pyruvate kinase-deficient patients.", "Br. J. Haematol.", "2001", "Bianchi P., Fermo E., Vercellati C., Zanella A., Baronciani L., Cotton F., Zappa M., Boschetti C., Iurlo A." ], [ "P30613-1", "11960989", "Structure and function of human erythrocyte pyruvate kinase. Molecular basis of nonspherocytic hemolytic anemia.", "J. Biol. Chem.", "2002", "Wang C., Bianchi P., Chiarelli L.R., Galizzi A., Mattevi A., Valentini G., Zanella A., Abraham D.J., Dolzan M., Fortin R." ], [ "P30613-1", "1445295", "Structural analysis of human pyruvate kinase L-gene and identification of the promoter activity in erythroid cells.", "Biochem. Biophys. Res. Commun.", "1992", "Fujii H., Kanno H., Miwa S." ], [ "P30613-1", "1536957", "Identical point mutations of the R-type pyruvate kinase (PK) cDNA found in unrelated PK variants associated with hereditary hemolytic anemia.", "Blood", "1992", "Fujii H., Kanno H., Miwa S., Hirono A., Omine M." ], [ "P30613-1", "1896471", "cDNA cloning of human R-type pyruvate kinase and identification of a single amino acid substitution (Thr384-->Met) affecting enzymatic stability in a pyruvate kinase variant (PK Tokyo) associated with hereditary hemolytic anemia.", "Proc. Natl. Acad. Sci. U.S.A.", "1991", "Fujii H., Kanno H., Miwa S., Hirono A." ], [ "P30613-1", "19085939", "Fifteen novel mutations in PKLR associated with pyruvate kinase (PK) deficiency: structural implications of amino acid substitutions in PK.", "Hum. Mutat.", "2009", "Huizinga E.G., Hadders M.A., van Solinge W.W., van Wijk R., van Oirschot B.A., van Wesel A.C.W." ], [ "P30613-1", "2018831", "Point mutations in the L-type pyruvate kinase gene of two children with hemolytic anemia caused by pyruvate kinase deficiency.", "Blood", "1991", "Winkler H., Neubauer B., Hofferbert S., Lakomek M., Schroter W., Parke M." ], [ "P30613-1", "21794208", "Exome sequencing and unrelated findings in the context of complex disease research: ethical and clinical implications.", "Discov. Med.", "2011", "Lin Y., Liu Y., Tian L., Wang J., Wang W., Wei Z., Zhang P., Lyon G.J., Hakonarson H., Johnson W.E., Wang K., Jiang T., Moore B., Yandell M., Glessner J.T., Xing J., van Solinge W.W., Reimherr F., Bodily P.M., Clement M., Elia J., Robison R.J., Van Wijk R." ], [ "P30613-1", "3126495", "Human liver type pyruvate kinase: complete amino acid sequence and the expression in mammalian cells.", "Proc. Natl. Acad. Sci. U.S.A.", "1988", "Nagata S., Tani K., Fujii H., Miwa S." ], [ "P30613-1", "3566732", "Human liver type pyruvate kinase: cDNA cloning and chromosomal assignment.", "Biochem. Biophys. Res. Commun.", "1987", "Tanaka T., Yoshida M.C., Tani K., Fujii H., Miwa S., Noguchi T., Toyoshima K., Tsutsumi H., Sukegawa J." ], [ "P30613-1", "7706479", "Molecular study of pyruvate kinase deficient patients with hereditary nonspherocytic hemolytic anemia.", "J. Clin. Invest.", "1995", "Beutler E., Baronciani L." ], [ "P30613-1", "8161798", "Molecular abnormality of erythrocyte pyruvate kinase deficiency in the Amish.", "Blood", "1994", "Fujii H., Kanno H., Miwa S., Ballas S.K., Bowman H.S." ], [ "P30613-1", "8180378", "Mutations in the pyruvate kinase L gene in patients with hereditary hemolytic anemia.", "Blood", "1994", "Nuernberg P., Reis A., Brabec V., Jacobasch G., Lenzner C., Sakalova A., Thiele B.-J." ], [ "P30613-1", "8476433", "Molecular basis of impaired pyruvate kinase isozyme conversion in erythroid cells: a single amino acid substitution near the active site and decreased mRNA content of the R-type PK.", "Biochem. Biophys. Res. Commun.", "1993", "Fujii H., Kanno H., Miwa S., Tsujino G." ], [ "P30613-1", "8481523", "Low substrate affinity of pyruvate kinase variant (PK Sapporo) caused by a single amino acid substitution (426 Arg-->Gln) associated with hereditary hemolytic anemia.", "Blood", "1993", "Fujii H., Kanno H., Miwa S." ], [ "P30613-1", "8483951", "Analysis of pyruvate kinase-deficiency mutations that produce nonspherocytic hemolytic anemia.", "Proc. Natl. Acad. Sci. U.S.A.", "1993", "Beutler E., Baronciani L." ], [ "P30613-1", "8664896", "Mutations in pyruvate kinase.", "Hum. Mutat.", "1996", "Beutler E., Baronciani L." ], [ "P30613-1", "8807089", "Hematologically important mutations: red cell pyruvate kinase.", "Blood Cells Mol. Dis.", "1996", "Bianchi P., Zanella A., Baronciani L." ], [ "P30613-1", "9075576", "Hematologically important mutations: red cell pyruvate kinase (1st update).", "Blood Cells Mol. Dis.", "1996", "Bianchi P., Zanella A., Baronciani L." ], [ "P30613-1", "9090535", "G-to-T transition at cDNA nt 110 (K37Q) in the PKLR (pyruvate kinase) gene is the molecular basis of a case of hereditary increase of red blood cell ATP.", "Hum. Mutat.", "1997", "Beutler E., Roos D., van Zwieten R., Westwood B." ], [ "P30613-1", "9482576", "Novel mutations and structural implications in R-type pyruvate kinase-deficient patients from Southern Italy.", "Hum. Mutat.", "1998", "Alfinito F., Ferraro F., Rotoli B., Salvatore F., Zagari A., Vitale D., Pastore L., Calise R.M., Frisso G., della Morte R." ], [ "P30613-1", "9827908", "Molecular characterization of the PK-LR gene in pyruvate kinase deficient Spanish patients.", "Br. J. Haematol.", "1998", "Alvarez R., Morey M., Vives Corrons J.L., Remacha A., Bureo E., Carrera A., Cortes T., Estella J., Nomdedeu B., Perez Lungmus G., Pujades A., Sanchez J.M., Zarza R." ], [ "P30613-1", "9886305", "A new sickle cell disease phenotype associating Hb S trait, severe pyruvate kinase deficiency (PK Conakry), and an alpha-2 globin gene variant (Hb Conakry).", "Br. J. Haematol.", "1998", "Wajcman H., Cohen-Solal M., Bardakdjian-Michau J., Galacteros F., Kister J., Poyart C., Prehu C., Prome D., Bachir D., Valentin C." ], [ "Q5MIZ7-1", "11230166", "Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.", "Genome Res.", "2001", "Ansorge W., Bauersachs S., Beyer A., Bloecker H., Blum H., Boecher M., Duesterhoeft A., Gassenhuber J., Glassl S., Heubner D., Klein M., Koehrer K., Korn B., Lauber J., Mewes H.-W., Obermaier B., Ottenwaelder B., Poustka A., Strack N., Tampe J., Wambutt R., Weil B., Wellenreuther R., Wiemann S." ], [ "Q5MIZ7-1", "16964243", "A probability-based approach for high-throughput protein phosphorylation analysis and site localization.", "Nat. Biotechnol.", "2006", "Beausoleil S.A., Gerber S.A., Gygi S.P., Rush J., Villen J." ], [ "Q5MIZ7-1", "15616564", "An endoribonuclease-prepared siRNA screen in human cells identifies genes essential for cell division.", "Nature", "2004", "Korn B., Yaspo M.-L., Pisabarro M.T., Habermann B., Buchholz F., Poser I., Pelletier L., Drechsel D., Kittler R., Fischer S., Grabner H., Heninger A.-K., Himmelbauer H., Konstantinova I., Neugebauer K., Putz G." ], [ "Q5MIZ7-1", "16085932", "A novel, evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity.", "Mol. Cell. Proteomics", "2005", "Aebersold R., Sanchez A., Gingras A.-C., Raught B., Sonenberg N., Fields S., Hafen E., Caballero M., Hazbun T.R., Zarske M." ], [ "Q5MIZ7-1", "18487071", "Depletion of protein phosphatase 4 in human cells reveals essential roles in centrosome maturation, cell migration and the regulation of Rho GTPases.", "Int. J. Biochem. Cell Biol.", "2008", "Cohen P.T.W., Philp A., Prescott A.R., Martin-Granados C., Oxenham S.K." ], [ "Q5MIZ7-1", "18614045", "A PP4-phosphatase complex dephosphorylates gamma-H2AX generated during DNA replication.", "Mol. Cell", "2008", "Xu X., Lieberman J., Pfeifer G.P., Zhong J., Chowdhury D., Liao J., Zhong X., Weinstock D.M., Ahmed F., Dykxhoorn D.M." ], [ "P23919-1", "19608861", "Lysine acetylation targets protein complexes and co-regulates major cellular functions.", "Science", "2009", "Choudhary C., Gnad F., Kumar C., Mann M., Nielsen M.L., Olsen J.V., Rehman M., Walther T.C." ], [ "P23919-1", "12614151", "Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds.", "Biochemistry", "2003", "Konrad M., Meier C., Lavie A., Ostermann N., Monnerjahn C., Segura-Pena D., Veit T." ], [ "P23919-1", "2017365", "Molecular cloning and expression of the human deoxythymidylate kinase gene in yeast.", "Nucleic Acids Res.", "1991", "Sclafani R.A., Su J.Y." ], [ "P23919-1", "8024690", "Human dTMP kinase: gene expression and enzymatic activity coinciding with cell cycle progression and cell growth.", "DNA Cell Biol.", "1994", "Li C., Tang A., Zhang S.Q., Drisco B., Huang S.H., Jong A., Seeger R." ], [ "Q8NHX4-1", "12812072", "Molecular cloning for testis spermatogenesis cell apoptosis related gene TSARG1 and Mtsarg1 and expression analysis for Mtsarg1 gene.", "Yi Chuan Xue Bao", "2003", "Liu G., Li L.Y., Lu G.X., Xing X.W., Fu J.J., Liu S.F." ], [ "Q8NHX9-1", "18488028", "Two newly identified genetic determinants of pigmentation in Europeans.", "Nat. Genet.", "2008", "Gudbjartsson D.F., Jakobsdottir M., Kiemeney L.A., Kong A., Rafnar T., Stacey S.N., Stefansson K., Steinberg S., Sulem P., Thorleifsson G., Thorsteinsdottir U., Gudjonsson S.A., Tucker M.A., Palsson S., Goldstein A.M., Aben K.K., Benediktsdottir K.R., Vermeulen S.H., Helgason A., Gulcher J., Olafsson J.H., Palsson A., Ragnarsson R., Sigurgeirsson B., Thorisdottir K." ], [ "Q8NHX9-1", "19387438", "NAADP mobilizes calcium from acidic organelles through two-pore channels.", "Nature", "2009", "Lin Y., Ma J., Pan Z., Tang J., Wang C., Zhu Y., Cheng X., Hao X., Lin P., Xiao R., Rietdorf K., Zhu M.X., Ruas M., Evans A.M., Parrington J., Galione A., Arredouani A., Calcraft P.J., Chuang K.T., Teboul L., Wyatt C.N." ], [ "Q8NHX9-1", "19620632", "Essential requirement for two-pore channel 1 in NAADP-mediated calcium signaling.", "J. Cell Biol.", "2009", "Gao X., Cai X., Patel S., Brailoiu E., Brailoiu G.C., Dun N.J., Churamani D., Marchant J.S., Boulware M.J., Hooper R., Schrlau M.G." ], [ "Q8NHX9-1", "22012985", "Leucine-rich repeat kinase 2 regulates autophagy through a calcium-dependent pathway involving NAADP.", "Hum. Mol. Genet.", "2012", "Zhang L., Patel S., Woodman P.G., Churchill G.C., Bloor-Young D., Churamani D., Gomez-Suaga P., Hilfiker S., Luzon-Toro B." ], [ "Q8NHX9-1", "24188827", "Hax-1 identified as a two-pore channel (TPC)-binding protein.", "FEBS Lett.", "2013", "Lai F.A., Galione A., Lam A.K., Zissimopoulos S." ], [ "Q9NXR8-1", "12080476", "Allelic loss and reduced expression of the ING3, a candidate tumor suppressor gene at 7q31, in human head and neck cancers.", "Oncogene", "2002", "Ito S., Shimizu K., Fukushima K., Ouchida M., Nakashima T., Nagai N., Gunduz M., Jitsumori Y., Nishizaki K." ], [ "Q9NXR8-1", "12545155", "A novel PHD-finger motif protein, p47ING3, modulates p53-mediated transcription, cell cycle control, and apoptosis.", "Oncogene", "2003", "Yokota J., Miura K., Nagashima M., Okamura S., Harris C.C., Shiseki M., Kitahama-Shiseki M., Pedeux R.M." ], [ "Q9NXR8-1", "16728974", "ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression.", "Nature", "2006", "Cote J., Shi Y., Shi X., Ayer D.E., Hong T., Kutateladze T.G., Cairns B.R., Cayrou C., Michishita E., Lacoste N., Lan F., Hung T., Chua K.F., Gozani O., Saha A., Carney D., Davrazou F., Ewalt M., Kaadige M.R., Pena P., Walter K.L." ], [ "Q9NXR8-1", "19154204", "Arabidopsis ING and Alfin1-like protein families localize to the nucleus and bind to H3K4me3/2 via plant homeodomain fingers.", "Plant J.", "2009", "Lee D., Lee W.Y., Chung W.I., Kwon C.S." ], [ "Q9NXR8-1", "12963728", "Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex.", "J. Biol. Chem.", "2003", "Cai Y., Conaway J.W., Conaway R.C., Jin J., Parmely T.J., Sato S., Sorokina I., Tomomori-Sato C." ], [ "Q9NXR8-1", "14966270", "Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans.", "Mol. Cell. Biol.", "2004", "Cote J., Doyon Y., Lane W.S., Selleck W., Tan S." ], [ "Q9NXR8-1", "15196461", "The highly conserved and multifunctional NuA4 HAT complex.", "Curr. Opin. Genet. Dev.", "2004", "Cote J., Doyon Y." ], [ "Q9NXR8-1", "19608861", "Lysine acetylation targets protein complexes and co-regulates major cellular functions.", "Science", "2009", "Choudhary C., Gnad F., Kumar C., Mann M., Nielsen M.L., Olsen J.V., Rehman M., Walther T.C." ], [ "Q9NXR8-1", "25218447", "Uncovering global SUMOylation signaling networks in a site-specific manner.", "Nat. Struct. Mol. Biol.", "2014", "Hendriks I.A., Mann M., Vertegaal A.C., D'Souza R.C., Verlaan-de Vries M., Yang B." ], [ "Q9NXR8-1", "25772364", "SUMO-2 orchestrates chromatin modifiers in response to DNA damage.", "Cell Rep.", "2015", "Hendriks I.A., Olsen J.V., Vertegaal A.C., Treffers L.W., Verlaan-de Vries M." ], [ "Q9NXR8-1", "24463511", "ANP32E is a histone chaperone that removes H2A.Z from chromatin.", "Nature", "2014", "Diebold M.L., Dimitrov S., Hamiche A., Mak T.W., Marek M., Obri A., Ouararhni K., Padmanabhan K., Papin C., Reilly P.T., Romier C., Roy L., Stoll I." ], [ "Q9NXR8-1", "16387653", "ING tumor suppressor proteins are critical regulators of chromatin acetylation required for genome expression and perpetuation.", "Mol. Cell", "2006", "Cote J., Doyon Y., Lane W.S., Selleck W., Tan S., Yang X.-J., Cayrou C., Cote V., Landry A.-J., Ullah M." ], [ "Q9C0H2-1", "17081983", "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.", "Cell", "2006", "Blagoev B., Gnad F., Kumar C., Macek B., Mann M., Mortensen P., Olsen J.V." ], [ "Q9C0H2-1", "18220336", "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.", "J. Proteome Res.", "2008", "Cantin G.T., Lee J.-D., Lu B., Park S.K., Xu T., Yates J.R. III, Yi W., Yates J.R., Lee J.D." ], [ "Q9C0H2-1", "19159218", "Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.", "J. Proteome Res.", "2009", "Chen R., Han G., Jiang X., Sun D., Wang F., Wang L., Ye M., Zou H." ], [ "Q9C0H2-1", "15010458", "A novel human Cl(-) channel family related to Drosophila flightless locus.", "J. Biol. Chem.", "2004", "Suzuki M., Mizuno A." ], [ "Q9C0H5-1", "18691976", "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle.", "Mol. Cell", "2008", "Bairlein M., Daub H., Gnad F., Greff Z., Keri G., Korner R., Mann M., Olsen J.V., Oppermann F.S., Stemmann O." ], [ "Q9C0H6-1", "11401425", "Identification and characterization of KLHL4, a novel human homologue of the Drosophila Kelch gene that maps within the X-linked cleft palate and ankyloglossia (CPX) critical region.", "Genomics", "2001", "Moore G.E., Ross M.T., Stanier P., Arnason A., Bjornsson A., Braybrook C., Howell G., Warry G." ], [ "Q9C0H9-5", "17525734", "p140Cap protein suppresses tumour cell properties, regulating Csk and Src kinase activity.", "EMBO J.", "2007", "Silengo L., Tarone G., Turco E., Aramu S., Cabodi S., Cavallo F., Damiano L., Defilippi P., Di Stefano P., Forni G., Piva R., Praduroux A., Tordella L." ], [ "Q9C0H9-5", "14657239", "p130Cas-associated protein (p140Cap) as a new tyrosine-phosphorylated protein involved in cell spreading.", "Mol. Biol. Cell", "2004", "Silengo L., Tarone G., Turco E., Cabodi S., Defilippi P., Di Stefano P., Giuffrida M.G., Bergatto E., Erba E.B., Margaria V." ], [ "Q9C0H9-5", "18475297", "SNIP/p140Cap mRNA expression is an unfavourable prognostic factor in breast cancer and is not expressed in normal breast tissue.", "Br. J. Cancer", "2008", "Kennedy S., Clynes M., Crown J., Doolan P., Mehta J.P., O'Driscoll L., Rani S." ], [ "Q9C0H9-5", "18662323", "Characterization of a multidomain adaptor protein, p140Cap, as part of a pre-synaptic complex.", "J. Neurochem.", "2008", "Ito H., Morishita R., Usuda N., Nagata K., Sudo K., Asano T., Iwamoto I., Defilippi P., Di Stefano P., Atsuzawa K., Semba R., Takei S." ], [ "Q9C0H9-5", "19146815", "Dynamic microtubules regulate dendritic spine morphology and synaptic plasticity.", "Neuron", "2009", "Grigoriev I., Akhmanova A., Gouveia S.M., Hoogenraad C.C., Demmers J., Kapitein L.C., Wulf P.S., Jaworski J., Camera P., Defilippi P., Di Stefano P., Dortland B.R., Spangler S.A., Krugers H." ], [ "Q9NXR1-2", "17600710", "Cenp-F links kinetochores to Ndel1/Nde1/Lis1/dynein microtubule motor complexes.", "Curr. Biol.", "2007", "Taylor S.S., Vergnolle M.A.S." ], [ "Q9NXR1-2", "16291865", "Nudel contributes to microtubule anchoring at the mother centriole and is involved in both dynein-dependent and -independent centrosomal protein assembly.", "Mol. Biol. Cell", "2006", "Song W., Wang F., Zhang Q., Chen Q., Zhu X., Yang Z., Guo J." ], [ "Q9NXR1-2", "16682949", "Centrosomal proteins Nde1 and Su48 form a complex regulated by phosphorylation.", "Oncogene", "2006", "Wang Q., Zhang H., Liu Q., Li B., Masuda K., Sato N., Du X., Greene M.I., Hirohashi Y., Furuuchi K." ], [ "Q9NXR1-2", "19927128", "Ndel1 palmitoylation: a new mean to regulate cytoplasmic dynein activity.", "EMBO J.", "2010", "Fukata Y., Fukata M., Segal M., Orr I., Reiner O., Sapir T., Shmueli A., Noritake J., Bar A., Sapoznik S., Tsutsumi R." ], [ "Q9NXR1-2", "21529751", "Human mutations in NDE1 cause extreme microcephaly with lissencephaly.", "Am. J. Hum. Genet.", "2011", "Alkuraya F.S., Cai X., Feng Y., Al-Dosari M.S., Hill R.S., Kentab A., Shaheen R., Walsh C.A., Barry B.J., Mochida G.H., Partlow J.N., Jan M., Felie J.M., Emery C., Gascon G.G." ], [ "Q9NXR1-2", "21529752", "The essential role of centrosomal NDE1 in human cerebral cortex neurogenesis.", "Am. J. Hum. Genet.", "2011", "Crosier M., Sheridan E., Yilmaz S., Bilguvar K., Gunel M., Springell K., Lisgo S.N., Malik S., Woods C.G., Quarrell O., Gergely F., Tuysuz B., Carvalho O.P., Karbani G., Khurshid M., Nicholas A.K., Lindsay S., Cox J.J., Gannon C., Bakircioglu M., Barak T., Dincer A., Caglayan O." ], [ "Q9NXR1-2", "22526350", "Novel NDE1 homozygous mutation resulting in microhydranencephaly and not microlyssencephaly.", "Neurogenetics", "2012", "Tolun A., Yalcinkaya C., Guven A., Bozoglu T.M., Gunduz A." ], [ "Q9NXR1-2", "18220336", "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.", "J. Proteome Res.", "2008", "Cantin G.T., Lee J.-D., Lu B., Park S.K., Xu T., Yates J.R. III, Yi W., Yates J.R., Lee J.D." ], [ "Q9NXR1-2", "12556484", "Human Nudel and NudE as regulators of cytoplasmic dynein in poleward protein transport along the mitotic spindle.", "Mol. Cell. Biol.", "2003", "Huang Q., Shen Y., Li F., Liang Y., Zhao X., Zhu X., Yan X." ], [ "Q07960-1", "18088087", "Phosphoproteome of resting human platelets.", "J. Proteome Res.", "2008", "Gambaryan S., Lewandrowski U., Moebius J., Schuetz C., Sickmann A., Walter U., Wiesner J., Wortelkamp S., Zahedi R.P., Schutz C." ], [ "Q07960-1", "19608861", "Lysine acetylation targets protein complexes and co-regulates major cellular functions.", "Science", "2009", "Choudhary C., Gnad F., Kumar C., Mann M., Nielsen M.L., Olsen J.V., Rehman M., Walther T.C." ], [ "Q07960-1", "22223895", "Comparative large-scale characterisation of plant vs. mammal proteins reveals similar and idiosyncratic N-alpha acetylation features.", "Mol. Cell. Proteomics", "2012", "Bienvenut W.V., Espagne C., Giglione C., Lilla S., Martinez A., Meinnel T., Sumpton D." ], [ "Q07960-1", "15282546", "Exportin 7 defines a novel general nuclear export pathway.", "EMBO J.", "2004", "Bohnsack M.T., Goerlich D., Jaekle U., Mingot J.-M." ], [ "Q07960-1", "1903516", "Bcr encodes a GTPase-activating protein for p21rac.", "Nature", "1991", "Hall C., Lim L., Garrett M.D., Hall A., Monfries C., Brill S., Diekmann D., Hsuan J., Totty N." ], [ "Q07960-1", "1905930", "Purification and N-terminal sequence of the p21rho GTPase-activating protein, rho GAP.", "Biochem. J.", "1991", "Garrett M.D., Hall A., Totty N., Major G.N." ], [ "Q07960-1", "8253717", "Cloning and expression of a human CDC42 GTPase-activating protein reveals a functional SH3-binding domain.", "J. Biol. Chem.", "1993", "Ashkenazi A., Zheng Y., Cerione R.A., Kuang W.-J., Hart M.J., Evans T., Barfod E.T." ], [ "Q07960-1", "8288572", "Characterization of rhoGAP. A GTPase-activating protein for rho-related small GTPases.", "J. Biol. Chem.", "1994", "Hall A., Brill S., van Erp H.E., Lancaster C.A., Self A.J., Taylor-Harris P.M." ], [ "Q07960-1", "9009196", "The structure of the GTPase-activating domain from p50rhoGAP.", "Nature", "1997", "Eccleston J.F., Gamblin S.J., Xiao B., Smerdon S.J., Musacchio A., Nurmahomed K., Barrett T., Dodson G., Dodson E.J., Ludbrook S.B." ], [ "Q07960-1", "12901880", "BNIPL-2, a novel homologue of BNIP-2, interacts with Bcl-2 and Cdc42GAP in apoptosis.", "Biochem. Biophys. Res. Commun.", "2003", "Gu J., Guo M., Jiang H., Li J., Qin W., Wan D., Xu J., Yao G., Zhang P., Zhou X., Hu J., Shen L." ], [ "Q07960-1", "9262406", "Crystal structure of a small G protein in complex with the GTPase-activating protein rhoGAP.", "Nature", "1997", "Eccleston J.F., Gamblin S.J., Walker P.A., Owen D., Rittinger K., Smerdon S.J., Laue E., Nurmahomed K." ] ] }, "readme": "Name\n - Human Protein Citations (UniProtKB)\n\nVersion\n - 1.5.18\n\nCreated on\n - 2019-01-23T17:21:05.902655\n\nModified on\n - 2020-04-10T11:27:33.124175\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations dataset contains publication information for human [taxid:9606] UniProtKB accessions that includes PMID, journal name, date and author and title. Publications of large scale studies, and high frequency publications pertaining to genome sequencing, cDNA, chromosomes have been filtered out as per https://data.glygen.org/ln2wwwdata/compiled/human_protein_blacklisted_pmids_uniprotkb.csv. The dataset is derived from 2019-09 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - publications\n - PMID\n - journal\n - citations\n - authors\n - UniProtKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-homo-sapiens.nt\n Name: human_protein_blacklisted_pmids_uniprotkb.csv\n URI: https://data.glygen.org/ln2wwwdata/compiled/human_protein_blacklisted_pmids_uniprotkb.csv\n Name: human_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: human_protein_citations_uniprotkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_citations_uniprotkb.csv\n Name: human_protein_citations_uniprotkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_citations_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"17343\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"75717\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1600\"\n Name: \"authors\"\n Description: \"Authors of the associated publications\"\n Unique Values: \"74620\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"60\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"75743\"", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/human_protein_citations_uniprotkb.csv" }