{ "bcoid": "GLY_000264", "title": "Rat Protein Citations (RefSeq)", "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...", "filename": "rat_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "E9PSK7-1...", "28259553..." ], [ "Q9JKB5-1...", "23487765..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "E9PSK7-1", "28259553", "JIP3 regulates neuronal radial migration by mediating TrkB axonal anterograde transport in the developing cerebral cortex.", "Biochemical and biophysical research communications", "2017 Apr 15", "Ma H, Yu H, Li T, Zhao Y, Hou M, Chen Z, Wang Y, Sun T" ], [ "Q9JKB5-1", "23487765", "ARID4A and ARID4B regulate male fertility, a functional link to the AR and RB pathways.", "Proceedings of the National Academy of Sciences of the United States of America", "2013 Mar 19", "Wu RC, Jiang M, Beaudet AL, Wu MY" ], [ "Q62940-1", "30632068", "Microarray analysis and functional characterization revealed NEDD4-mediated cardiomyocyte autophagy induced by angiotensin II.", "Cell stress & chaperones", "2019 Jan", "Gu Y, Yang F, Yu Y, Meng J, Li Y, Xu R, Liu Y, Xiao Y, Xu Z, Ma L, Wang G" ], [ "Q8K585-1", "19465398", "HMGA2 exhibits dRP/AP site cleavage activity and protects cancer cells from DNA-damage-induced cytotoxicity during chemotherapy.", "Nucleic acids research", "2009 Jul", "Summer H, Li O, Bao Q, Zhan L, Peter S, Sathiyanathan P, Henderson D, Klonisch T, Goodman SD, Droge P" ], [ "D4AC23-1", "7953530", "Identification of six Tcp-1-related genes encoding divergent subunits of the TCP-1-containing chaperonin.", "Current biology : CB", "1994 Feb 1", "Kubota H, Hynes G, Carne A, Ashworth A, Willison K" ], [ "P18598-1", "25822172", "Remodeling of the residual gastric mucosa after roux-en-y gastric bypass or vertical sleeve gastrectomy in diet-induced obese rats.", "PloS one", "2015", "Arapis K, Cavin JB, Gillard L, Cluzeaud F, Letteron P, Ducroc R, Le Beyec J, Hourseau M, Couvelard A, Marmuse JP, Le Gall M, Bado A" ], [ "D3ZDM5-1", "18057100", "Maternally derived FILIA-MATER complex localizes asymmetrically in cleavage-stage mouse embryos.", "Development (Cambridge, England)", "2008 Jan", "Ohsugi M, Zheng P, Baibakov B, Li L, Dean J" ], [ "F1LX27-1", "17265047", "Achromatopsia: the CNGB3 p.T383fsX mutation results from a founder effect and is responsible for the visual phenotype in the original report of uniparental disomy 14.", "Human genetics", "2007 May", "Wiszniewski W, Lewis RA, Lupski JR" ], [ "D3ZM14-1", "24647116", "The Nrf2 regulatory network provides an interface between redox and intermediary metabolism.", "Trends in biochemical sciences", "2014 Apr", "Hayes JD, Dinkova-Kostova AT" ], [ "Q3SWS8-1", "17172455", "Rae1 interaction with NuMA is required for bipolar spindle formation.", "Proceedings of the National Academy of Sciences of the United States of America", "2006 Dec 26", "Wong RW, Blobel G, Coutavas E" ], [ "P30710-1", "19546506", "Epididymis seleno-independent glutathione peroxidase 5 maintains sperm DNA integrity in mice.", "The Journal of clinical investigation", "2009 Jul", "Chabory E, Damon C, Lenoir A, Kauselmann G, Kern H, Zevnik B, Garrel C, Saez F, Cadet R, Henry-Berger J, Schoor M, Gottwald U, Habenicht U, Drevet JR, Vernet P" ], [ "Q91XV7-1", "17388661", "Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen.", "PLoS medicine", "2007 Mar", "Bertheau P, Turpin E, Rickman DS, Espie M, de Reynies A, Feugeas JP, Plassa LF, Soliman H, Varna M, de Roquancourt A, Lehmann-Che J, Beuzard Y, Marty M, Misset JL, Janin A, de The H" ], [ "Q9R1J8-1", "10455179", "Molecular characterization of a novel basement membrane-associated proteoglycan, leprecan.", "The Journal of biological chemistry", "1999 Aug 27", "Wassenhove-McCarthy DJ, McCarthy KJ" ], [ "Q91ZS3-1", "19487699", "Cab45b, a Munc18b-interacting partner, regulates exocytosis in pancreatic beta-cells.", "The Journal of biological chemistry", "2009 Jul 31", "Zhang Y, Kang YH, Chang N, Lam PP, Liu Y, Olkkonen VM, Gaisano HY" ], [ "Q2KMM4-1", "15896353", "Arachidonic acid cascade in endothelial pathobiology.", "Microvascular research", "2005 May", "Bogatcheva NV, Sergeeva MG, Dudek SM, Verin AD" ], [ "Q5RK24-1", "197206", "Studies on mevalonate kinase, phosphomevalonate kinase and pyrophosphomevalonate decarboxylase in developing rat brain.", "Journal of neurochemistry", "1977 Apr", "Ramachandran CK, Shah SN" ], [ "Q9Z0V5-1", "29804005", "Evidence for the interaction of peroxiredoxin-4 with the store-operated calcium channel activator STIM1 in liver cells.", "Cell calcium", "2018 Sep", "Tam KC, Ali E, Hua J, Chataway T, Barritt GJ" ], [ "Q5U302-1", "26377600", "Alpha-Catulin Co-Localizes With Vimentin Intermediate Filaments and Functions in Pulmonary Vascular Endothelial Cell Migration via ROCK.", "Journal of cellular physiology", "2016 Apr", "Bear MD, Liu T, Abualkhair S, Ghamloush MA, Hill NS, Preston I, Fanburg BL, Kayyali US, Toksoz D" ], [ "Q9JI03-1", "9099729", "The membrane-spanning proteoglycan NG2 binds to collagens V and VI through the central nonglobular domain of its core protein.", "The Journal of biological chemistry", "1997 Apr 18", "Tillet E, Ruggiero F, Nishiyama A, Stallcup WB" ], [ "E9PT66-1", "28781166", "Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.", "Cell", "2017 Aug 10", "Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Luhrmann R, Stark H" ], [ "M0RAS3-1", "20813266", "The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics.", "Cell", "2010 Sep 3", "Ohta S, Bukowski-Wills JC, Sanchez-Pulido L, Alves Fde L, Wood L, Chen ZA, Platani M, Fischer L, Hudson DF, Ponting CP, Fukagawa T, Earnshaw WC, Rappsilber J" ], [ "Q6P3V8-1", "1373810", "Selective translational control and nonspecific posttranscriptional regulation of ribosomal protein gene expression during development and regeneration of rat liver.", "Molecular and cellular biology", "1992 May", "Aloni R, Peleg D, Meyuhas O" ], [ "Q9ERM3-1", "23449193", "Diacylglycerol acyltransferase-1 inhibition enhances intestinal fatty acid oxidation and reduces energy intake in rats.", "Journal of lipid research", "2013 May", "Schober G, Arnold M, Birtles S, Buckett LK, Pacheco-Lopez G, Turnbull AV, Langhans W, Mansouri A" ], [ "P53987-1", "29205833", "Monocarboxylate transporter 1 and the vulnerability of oligodendrocyte lineage cells to metabolic stresses.", "CNS neuroscience & therapeutics", "2018 Feb", "Zhou P, Guan T, Jiang Z, Namaka M, Huang QJ, Kong JM" ], [ "Q5HZX7-1", "24357060", "Novel lipid droplet-associated serine hydrolase regulates macrophage cholesterol mobilization.", "Arteriosclerosis, thrombosis, and vascular biology", "2014 Feb", "Goo YH, Son SH, Kreienberg PB, Paul A" ], [ "P18291-1", "26432892", "Regulatory B Cells with a Partial Defect in CD40 Signaling and Overexpressing Granzyme B Transfer Allograft Tolerance in Rodents.", "Journal of immunology (Baltimore, Md. : 1950)", "2015 Nov 15", "Durand J, Huchet V, Merieau E, Usal C, Chesneau M, Remy S, Heslan M, Anegon I, Cuturi MC, Brouard S, Chiffoleau E" ], [ "B5DFL0-1", "12600881", "Vasomodulation by skeletal muscle-derived nitric oxide requires alpha-syntrophin-mediated sarcolemmal localization of neuronal Nitric oxide synthase.", "Circulation research", "2003 Mar 21", "Thomas GD, Shaul PW, Yuhanna IS, Froehner SC, Adams ME" ], [ "Q9QYC6-1", "12618056", "Effect of the neurotoxic dose of methamphetamine on gene expression of parkin and Pael-receptors in rat striatum.", "Parkinsonism & related disorders", "2003 Mar", "Nakahara T, Kuroki T, Ohta E, Kajihata T, Yamada H, Yamanaka M, Hashimoto K, Tsutsumi T, Hirano M, Uchimura H" ], [ "D4A2A9-1", "11694571", "GCP5 and GCP6: two new members of the human gamma-tubulin complex.", "Molecular biology of the cell", "2001 Nov", "Murphy SM, Preble AM, Patel UK, O'Connell KL, Dias DP, Moritz M, Agard D, Stults JT, Stearns T" ], [ "P22449-1", "30530698", "Nuclear receptor HNF4A transrepresses CLOCK:BMAL1 and modulates tissue-specific circadian networks.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 Dec 26", "Qu M, Duffy T, Hirota T, Kay SA" ], [ "Q6IUU3-1", "24475161", "QSOX1 inhibits autophagic flux in breast cancer cells.", "PloS one", "2014", "Poillet L, Pernodet N, Boyer-Guittaut M, Adami P, Borg C, Jouvenot M, Delage-Mourroux R, Despouy G" ], [ "Q32Q54-1", "24385928", "Mutations in the UQCC1-interacting protein, UQCC2, cause human complex III deficiency associated with perturbed cytochrome b protein expression.", "PLoS genetics", "2013", "Tucker EJ, Wanschers BF, Szklarczyk R, Mountford HS, Wijeyeratne XW, van den Brand MA, Leenders AM, Rodenburg RJ, Reljic B, Compton AG, Frazier AE, Bruno DL, Christodoulou J, Endo H, Ryan MT, Nijtmans LG, Huynen MA, Thorburn DR" ], [ "Q8CHN6-1", "14570870", "Sphingosine-phosphate lyase enhances stress-induced ceramide generation and apoptosis.", "The Journal of biological chemistry", "2004 Jan 9", "Reiss U, Oskouian B, Zhou J, Gupta V, Sooriyakumaran P, Kelly S, Wang E, Merrill AH Jr, Saba JD" ], [ "Q7TSL3-1", "17035249", "A mutation in the F-box gene, Fbxo11, causes otitis media in the Jeff mouse.", "Human molecular genetics", "2006 Nov 15", "Hardisty-Hughes RE, Tateossian H, Morse SA, Romero MR, Middleton A, Tymowska-Lalanne Z, Hunter AJ, Cheeseman M, Brown SD" ], [ "Q5U777-1", "22785021", "Sulfaphenazole attenuates myocardial cell apoptosis accompanied with cardiac ischemia-reperfusion by suppressing the expression of BimEL and Noxa.", "Journal of pharmacological sciences", "2012", "Ishihara Y, Shimamoto N" ], [ "D3ZS29-1", "15788452", "Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst.", "Development (Cambridge, England)", "2005 May", "Strumpf D, Mao CA, Yamanaka Y, Ralston A, Chawengsaksophak K, Beck F, Rossant J" ], [ "O88656-1", "25637714", "Estrogen and androgen regulate actin-remodeling and endocytosis-related genes during rat spermiation.", "Molecular and cellular endocrinology", "2015 Mar 15", "Kumar A, Dumasia K, Gaonkar R, Sonawane S, Kadam L, Balasinor NH" ], [ "P70507-1", "12519791", "Role of G protein-coupled receptor kinase 4 and beta-arrestin 1 in agonist-stimulated metabotropic glutamate receptor 1 internalization and activation of mitogen-activated protein kinases.", "The Journal of biological chemistry", "2003 Apr 4", "Iacovelli L, Salvatore L, Capobianco L, Picascia A, Barletta E, Storto M, Mariggio S, Sallese M, Porcellini A, Nicoletti F, De Blasi A" ], [ "B2RYJ3-1", "12393421", "Enforced expression of CUL-4A interferes with granulocytic differentiation and exit from the cell cycle.", "Blood", "2003 Mar 1", "Li B, Yang FC, Clapp DW, Chun KT" ], [ "Q64361-1", "7524963", "Intracortical regionality represented by specific transcription for a novel protein, latexin.", "The European journal of neuroscience", "1994 Jun 1", "Hatanaka Y, Uratani Y, Takiguchi-Hayashi K, Omori A, Sato K, Miyamoto M, Arimatsu Y" ], [ "O54858-1", "9570147", "Cloning, sequence analysis, and distribution of rat metallocarboxypeptidase Z.", "DNA and cell biology", "1998 Apr", "Xin X, Day R, Dong W, Lei Y, Fricker LD" ], [ "Q3L7M0-1", "12626403", "Characterization of the rat alpha(1,3)galactosyltransferase: evidence for two independent genes encoding glycosyltransferases that synthesize Galalpha(1,3)Gal by two separate glycosylation pathways.", "Glycobiology", "2003 May", "Taylor SG, McKenzie IF, Sandrin MS" ], [ "D3ZGX8-1", "29352508", "Inhibition of BRD4 attenuates cardiomyocyte apoptosis via NF-kappaB pathway in a rat model of myocardial infarction.", "Cardiovascular therapeutics", "2018 Apr", "Sun Y, Xie Y, Du L, Sun J, Liu Z" ], [ "B5DFD5-1", "26191209", "Budesonide ameliorates lung function of the cigarette smoke-exposed rats through reducing matrix metalloproteinase-1 content.", "International journal of clinical and experimental pathology", "2015", "Sun J, Zhang P, Zhang B, Li K, Li Z, Li J, Zhang Y, Sun W" ], [ "Q9JK72-1", "15722349", "BACE1 cytoplasmic domain interacts with the copper chaperone for superoxide dismutase-1 and binds copper.", "The Journal of biological chemistry", "2005 May 6", "Angeletti B, Waldron KJ, Freeman KB, Bawagan H, Hussain I, Miller CC, Lau KF, Tennant ME, Dennison C, Robinson NJ, Dingwall C" ], [ "P42854-1", "23426365", "N-terminal cleaved pancreatitis-associated protein-III (PAP-III) serves as a scaffold for neurites and promotes neurite outgrowth.", "The Journal of biological chemistry", "2013 Apr 12", "Konishi H, Matsumoto S, Namikawa K, Kiyama H" ], [ "A0A0G2K754-1", "19170756", "SAP-1 is a microvillus-specific protein tyrosine phosphatase that modulates intestinal tumorigenesis.", "Genes to cells : devoted to molecular & cellular mechanisms", "2009 Mar", "Sadakata H, Okazawa H, Sato T, Supriatna Y, Ohnishi H, Kusakari S, Murata Y, Ito T, Nishiyama U, Minegishi T, Harada A, Matozaki T" ], [ "Q8K4V4-1", "25136126", "A unique PDZ domain and arrestin-like fold interaction reveals mechanistic details of endocytic recycling by SNX27-retromer.", "Proceedings of the National Academy of Sciences of the United States of America", "2014 Sep 2", "Gallon M, Clairfeuille T, Steinberg F, Mas C, Ghai R, Sessions RB, Teasdale RD, Collins BM, Cullen PJ" ], [ "A0A0G2K5C1-1", "15617687", "Range of HOX/TALE superclass associations and protein domain requirements for HOXA13:MEIS interaction.", "Developmental biology", "2005 Jan 15", "Williams TM, Williams ME, Innis JW" ], [ "Q9QZR8-1", "10896674", "PAPIN. A novel multiple PSD-95/Dlg-A/ZO-1 protein interacting with neural plakophilin-related armadillo repeat protein/delta-catenin and p0071.", "The Journal of biological chemistry", "2000 Sep 22", "Deguchi M, Iizuka T, Hata Y, Nishimura W, Hirao K, Yao I, Kawabe H, Takai Y" ], [ "Q07008-1", "7789282", "Notch1 is required for the coordinate segmentation of somites.", "Development (Cambridge, England)", "1995 May", "Conlon RA, Reaume AG, Rossant J" ], [ "D3Z941-1", "11714285", "The appended C-domain of human methionyl-tRNA synthetase has a tRNA-sequestering function.", "Biochemistry", "2001 Nov 27", "Kaminska M, Shalak V, Mirande M" ], [ "D3ZDY4-1", "20455898", "Expression of CCR8 is increased in asthma.", "Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology", "2010 Aug", "Mutalithas K, Guillen C, Raport C, Kolbeck R, Soler D, Brightling CE, Pavord ID, Wardlaw AJ" ], [ "Q63563-1", "30074836", "Effects of regular exercise on ventricular myocyte biomechanics and KATP channel function.", "American journal of physiology. Heart and circulatory physiology", "2018 Oct 1", "Wang X, Fitts RH" ], [ "P19627-1", "15919662", "Endothelin-induced, long lasting, and Ca2+ influx-independent blockade of intrinsic secretion in pituitary cells by Gz subunits.", "The Journal of biological chemistry", "2005 Jul 22", "Andric SA, Zivadinovic D, Gonzalez-Iglesias AE, Lachowicz A, Tomic M, Stojilkovic SS" ], [ "P09217-1", "7575416", "Identification of a brain-specific protein kinase C zeta pseudogene (psi PKC zeta) transcript.", "The Biochemical journal", "1995 Sep 15", "Andrea JE, Walsh MP" ], [ "Q9ES45-1", "11032719", "Thyroid oxidase (THOX2) gene expression in the rat thyroid cell line FRTL-5.", "Biochemical and biophysical research communications", "2000 Oct 22", "Dupuy C, Pomerance M, Ohayon R, Noel-Hudson MS, Deme D, Chaaraoui M, Francon J, Virion A" ], [ "P04468-1", "6094580", "Expression of kappa-casein in normal and neoplastic rat mammary gland is under the control of prolactin.", "The Journal of biological chemistry", "1984 Dec 10", "Nakhasi HL, Grantham FH, Gullino PM" ], [ "A0A0G2K4A8-1", "15343267", "Lats2/Kpm is required for embryonic development, proliferation control and genomic integrity.", "The EMBO journal", "2004 Sep 15", "McPherson JP, Tamblyn L, Elia A, Migon E, Shehabeldin A, Matysiak-Zablocki E, Lemmers B, Salmena L, Hakem A, Fish J, Kassam F, Squire J, Bruneau BG, Hande MP, Hakem R" ], [ "A0A0G2K677-1", "27356871", "Acetylated tau destabilizes the cytoskeleton in the axon initial segment and is mislocalized to the somatodendritic compartment.", "Molecular neurodegeneration", "2016 Jun 29", "Sohn PD, Tracy TE, Son HI, Zhou Y, Leite RE, Miller BL, Seeley WW, Grinberg LT, Gan L" ], [ "P60572-1", "20086016", "Pannexin1 and pannexin3 delivery, cell surface dynamics, and cytoskeletal interactions.", "The Journal of biological chemistry", "2010 Mar 19", "Bhalla-Gehi R, Penuela S, Churko JM, Shao Q, Laird DW" ], [ "P00507-1", "1820020", "Genetic and biochemical characterization of a new chymotrypsin isozyme of the house mouse, CTRA-1.", "Biochemical genetics", "1991 Dec", "von Deimling OH, Groning J, Gaa A" ], [ "Q8CFC9-1", "15703396", "Collaboration of PSD-Zip70 with its binding partner, SPAR, in dendritic spine maturity.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2005 Feb 9", "Maruoka H, Konno D, Hori K, Sobue K" ], [ "D3ZE05-1", "12746903", "One of two chondrocyte-expressed isoforms of cartilage intermediate-layer protein functions as an insulin-like growth factor 1 antagonist.", "Arthritis and rheumatism", "2003 May", "Johnson K, Farley D, Hu SI, Terkeltaub R" ], [ "P70616-1", "24316431", "Down-regulation of Zac1 gene expression in rat white adipose tissue by androgens.", "The Journal of steroid biochemistry and molecular biology", "2014 Mar", "Mirowska A, Sledzinski T, Smolenski RT, Swierczynski J" ], [ "B0BMZ4-1", "15280373", "Speriolin is a novel spermatogenic cell-specific centrosomal protein associated with the seventh WD motif of Cdc20.", "The Journal of biological chemistry", "2004 Oct 1", "Goto M, Eddy EM" ], [ "Q27W02-1", "11991638", "Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis.", "RNA (New York, N.Y.)", "2002 Apr", "Jurica MS, Licklider LJ, Gygi SR, Grigorieff N, Moore MJ" ], [ "D3ZUW6-1", "9122200", "Dominant-negative cyclin-selective ubiquitin carrier protein E2-C/UbcH10 blocks cells in metaphase.", "Proceedings of the National Academy of Sciences of the United States of America", "1997 Mar 18", "Townsley FM, Aristarkhov A, Beck S, Hershko A, Ruderman JV" ], [ "Q63014-1", "11279182", "A-kinase-anchoring protein AKAP95 is targeted to the nuclear matrix and associates with p68 RNA helicase.", "The Journal of biological chemistry", "2001 May 18", "Akileswaran L, Taraska JW, Sayer JA, Gettemy JM, Coghlan VM" ], [ "B2GVB9-1", "26188538", "Kindlin 3 (FERMT3) is associated with unstable atherosclerotic plaques, anti-inflammatory type II macrophages and upregulation of beta-2 integrins in all major arterial beds.", "Atherosclerosis", "2015 Sep", "Oksala N, Parssinen J, Seppala I, Klopp N, Illig T, Laaksonen R, Levula M, Raitoharju E, Kholova I, Sioris T, Kahonen M, Lehtimaki T, Hytonen VP" ], [ "P52759-1", "22094463", "Conserved YjgF protein family deaminates reactive enamine/imine intermediates of pyridoxal 5'-phosphate (PLP)-dependent enzyme reactions.", "The Journal of biological chemistry", "2012 Jan 27", "Lambrecht JA, Flynn JM, Downs DM" ], [ "Q9ES08-1", "25634809", "Hydroxy-alpha sanshool induces colonic motor activity in rat proximal colon: a possible involvement of KCNK9.", "American journal of physiology. Gastrointestinal and liver physiology", "2015 Apr 1", "Kubota K, Ohtake N, Ohbuchi K, Mase A, Imamura S, Sudo Y, Miyano K, Yamamoto M, Kono T, Uezono Y" ], [ "D3ZXL6-1", "18096721", "Tex19, a mammalian-specific protein with a restricted expression in pluripotent stem cells and germ line.", "Stem cells (Dayton, Ohio)", "2008 Mar", "Kuntz S, Kieffer E, Bianchetti L, Lamoureux N, Fuhrmann G, Viville S" ], [ "F1M077-1", "28733458", "Mapping of Wnt-Frizzled interactions by multiplex CRISPR targeting of receptor gene families.", "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "2017 Nov", "Voloshanenko O, Gmach P, Winter J, Kranz D, Boutros M" ], [ "D3ZE55-1", "17988630", "Activity-induced protocadherin arcadlin regulates dendritic spine number by triggering N-cadherin endocytosis via TAO2beta and p38 MAP kinases.", "Neuron", "2007 Nov 8", "Yasuda S, Tanaka H, Sugiura H, Okamura K, Sakaguchi T, Tran U, Takemiya T, Mizoguchi A, Yagita Y, Sakurai T, De Robertis EM, Yamagata K" ], [ "P31720-1", "23150673", "C1q-induced LRP1B and GPR6 proteins expressed early in Alzheimer disease mouse models, are essential for the C1q-mediated protection against amyloid-beta neurotoxicity.", "The Journal of biological chemistry", "2013 Jan 4", "Benoit ME, Hernandez MX, Dinh ML, Benavente F, Vasquez O, Tenner AJ" ], [ "O35987-1", "23649807", "The UBXN-2/p37/p47 adaptors of CDC-48/p97 regulate mitosis by limiting the centrosomal recruitment of Aurora A.", "The Journal of cell biology", "2013 May 13", "Kress E, Schwager F, Holtackers R, Seiler J, Prodon F, Zanin E, Eiteneuer A, Toya M, Sugimoto A, Meyer H, Meraldi P, Gotta M" ], [ "P61765-1", "28827281", "Munc18a clusters SNARE-bearing liposomes prior to trans-SNARE zippering.", "The Biochemical journal", "2017 Sep 24", "Arnold MG, Adhikari P, Kang B, Xu H" ], [ "Q3B7C7-1", "16546331", "Evolutionary conservation and murine embryonic expression of the gene encoding the SERTA domain-containing protein CDCA4 (HEPP).", "Gene", "2006 Jun 7", "Bennetts JS, Fowles LF, Berkman JL, van Bueren KL, Richman JM, Simpson F, Wicking C" ], [ "E9PTG0-1", "12477932", "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.", "Proceedings of the National Academy of Sciences of the United States of America", "2002 Dec 24", "Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA" ], [ "P26376-1", "23358889", "IFITM proteins restrict viral membrane hemifusion.", "PLoS pathogens", "2013 Jan", "Li K, Markosyan RM, Zheng YM, Golfetto O, Bungart B, Li M, Ding S, He Y, Liang C, Lee JC, Gratton E, Cohen FS, Liu SL" ], [ "D3ZQP6-1", "16210410", "Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation.", "Stem cells (Dayton, Ohio)", "2005 Oct", "Foster LJ, Zeemann PA, Li C, Mann M, Jensen ON, Kassem M" ], [ "O35531-1", "9449507", "Upregulation of B7.2, but not B7.1, on B cells from patients with allergic asthma.", "The Journal of allergy and clinical immunology", "1998 Jan", "Hofer MF, Jirapongsananuruk O, Trumble AE, Leung DY" ], [ "D3ZWV0-1", "20201933", "Ethanol impairs activation of retinoic acid receptors in cerebellar granule cells in a rodent model of fetal alcohol spectrum disorders.", "Alcoholism, clinical and experimental research", "2010 May", "Kumar A, Singh CK, DiPette DD, Singh US" ] ] }, "readme": "Name\n - Rat Protein Citations (RefSeq)\n\nVersion\n - 1.5.18\n\nCreated on\n - 2019-09-06T14:06:38.990766\n\nModified on\n - 2020-04-10T12:05:22.894637\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10116.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/source/refseq_protein_all_10116.gpff\n Name: rat_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_citations_refseq.csv\n Name: rat_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"10778\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"32355\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"1727\"\n Name: \"authors\"\n Description: \"Authors of the associated publications\"\n Unique Values: \"32180\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"6555\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"32356\"", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_citations_refseq.csv" }