{ "bcoid": "GLY_000261", "title": "Rat UniProtKB Xref PANTHER", "description": "The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q5RJK9-1...", "PTHR11800:SF..." ], [ "D3ZZY2-1...", "PTHR14150..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q5RJK9-1", "PTHR11800:SF13", "PTHR11800:SF13" ], [ "D3ZZY2-1", "PTHR14150", "PTHR14150" ], [ "Q5RJK0-1", "PTHR28556", "PTHR28556" ], [ "Q5RJK3-1", "PTHR13563", "PTHR13563" ], [ "Q5RJK5-1", "PTHR22812:SF134", "PTHR22812:SF134" ], [ "A0A096MKC6-1", "PTHR11430", "PTHR11430" ], [ "Q6MG55-1", "PTHR12277:SF54", "PTHR12277:SF54" ], [ "Q6MG56-1", "PTHR32286", "PTHR32286" ], [ "Q5XIH0-1", "PTHR22504", "PTHR22504" ], [ "Q6MG51-1", "PTHR14307", "PTHR14307" ], [ "F1M2W7-1", "PTHR10334", "PTHR10334" ], [ "Q6MG53-1", "PTHR14313", "PTHR14313" ], [ "D4AAV0-1", "PTHR11949", "PTHR11949" ], [ "P20961-1", "PTHR11461", "PTHR11461" ], [ "Q6MG59-1", "PTHR37347", "PTHR37347" ], [ "Q4KLP0-1", "PTHR23152", "PTHR23152" ], [ "M0RAP0-1", "PTHR20981", "PTHR20981" ], [ "M0RAP5-1", "PTHR10807:SF43", "PTHR10807:SF43" ], [ "M0RAP5-1", "PTHR10807", "PTHR10807" ], [ "F1M1W4-1", "PTHR13396", "PTHR13396" ], [ "Q8R553-1", "PTHR14139", "PTHR14139" ], [ "P30348-1", "PTHR10179", "PTHR10179" ], [ "Q9WUD2-1", "PTHR10582", "PTHR10582" ], [ "Q9WUD2-1", "PTHR10582:SF5", "PTHR10582:SF5" ], [ "Q07969-1", "PTHR11923", "PTHR11923" ], [ "Q07969-1", "PTHR11923:SF12", "PTHR11923:SF12" ], [ "D3ZZY1-1", "PTHR14429", "PTHR14429" ], [ "D3ZLV5-1", "PTHR21510", "PTHR21510" ], [ "Q8VHI8-1", "PTHR12825", "PTHR12825" ], [ "D3ZLV9-1", "PTHR24412:SF304", "PTHR24412:SF304" ], [ "A0A096MJY1-1", "PTHR10822", "PTHR10822" ], [ "A0A096MJY1-1", "PTHR10822:SF31", "PTHR10822:SF31" ], [ "Q2KMM2-1", "PTHR23249", "PTHR23249" ], [ "Q2KN99-1", "PTHR23167:SF18", "PTHR23167:SF18" ], [ "A0A096MJY2-1", "PTHR10264:SF49", "PTHR10264:SF49" ], [ "Q5M808-1", "PTHR12925", "PTHR12925" ], [ "D4A830-1", "PTHR10286", "PTHR10286" ], [ "D4A832-1", "PTHR20765", "PTHR20765" ], [ "B0JYS4-1", "PTHR35973", "PTHR35973" ], [ "A0A0G2K5R4-1", "PTHR21563", "PTHR21563" ], [ "O54783-1", "PTHR22603:SF35", "PTHR22603:SF35" ], [ "P56574-1", "PTHR11822", "PTHR11822" ], [ "Q5BK10-1", "PTHR10183:SF333", "PTHR10183:SF333" ], [ "O35152-1", "PTHR12791", "PTHR12791" ], [ "Q6P7Q1-1", "PTHR15189", "PTHR15189" ], [ "P48961-1", "PTHR10177:SF65", "PTHR10177:SF65" ], [ "P48961-1", "PTHR10177", "PTHR10177" ], [ "O35158-1", "PTHR44170:SF1", "PTHR44170:SF1" ], [ "M0R7U1-1", "PTHR23359", "PTHR23359" ], [ "F1M4Y5-1", "PTHR22437", "PTHR22437" ], [ "Q6AY39-1", "PTHR11214", "PTHR11214" ], [ "Q14U74-1", "PTHR10050", "PTHR10050" ], [ "P02767-1", "PTHR10395", "PTHR10395" ], [ "P02767-1", "PTHR10395:SF12", "PTHR10395:SF12" ], [ "D3ZNX2-1", "PTHR16520", "PTHR16520" ], [ "D4A4W8-1", "PTHR11267", "PTHR11267" ], [ "Q6AYD2-1", "PTHR13989", "PTHR13989" ], [ "D4A4W1-1", "PTHR28607", "PTHR28607" ], [ "D4A4W5-1", "PTHR24092", "PTHR24092" ], [ "D4A4W5-1", "PTHR24092:SF79", "PTHR24092:SF79" ], [ "D4A4W7-1", "PTHR22910", "PTHR22910" ], [ "A0A0G2JZN0-1", "PTHR11848", "PTHR11848" ], [ "G3V6I6-1", "PTHR20855", "PTHR20855" ], [ "Q6MG58-1", "PTHR32286", "PTHR32286" ], [ "Q561K4-1", "PTHR31800", "PTHR31800" ], [ "P63076-1", "PTHR11486:SF71", "PTHR11486:SF71" ], [ "P63076-1", "PTHR11486", "PTHR11486" ], [ "D3ZDS6-1", "PTHR13325", "PTHR13325" ], [ "D3ZDS4-1", "PTHR12636", "PTHR12636" ], [ "M0R9X4-1", "PTHR22705", "PTHR22705" ], [ "Q8CF82-1", "PTHR19229", "PTHR19229" ], [ "Q8CF82-1", "PTHR19229:SF100", "PTHR19229:SF100" ], [ "D3ZVN9-1", "PTHR23113", "PTHR23113" ], [ "P39020-1", "PTHR24328", "PTHR24328" ], [ "D3ZVN8-1", "PTHR10653", "PTHR10653" ], [ "D3ZZL3-1", "PTHR12872", "PTHR12872" ], [ "Q2VWP9-1", "PTHR13817:SF79", "PTHR13817:SF79" ], [ "A0A0G2K0T8-1", "PTHR34994", "PTHR34994" ], [ "M0RBX4-1", "PTHR14112", "PTHR14112" ], [ "A0A0G2JZ70-1", "PTHR12264", "PTHR12264" ], [ "Q5I2P1-1", "PTHR11267", "PTHR11267" ], [ "Q562C9-1", "PTHR23418", "PTHR23418" ], [ "F1LMV6-1", "PTHR23169:SF26", "PTHR23169:SF26" ], [ "P24135-1", "PTHR10336", "PTHR10336" ] ] }, "readme": "Name\n - Rat UniProtKB Xref PANTHER\n\nVersion\n - 1.5.18\n\nCreated on\n - 2019-09-06T14:06:38.988053\n\nModified on\n - 2020-04-10T12:03:58.907916\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniProtKB Xref PANTHER contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products.\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_protein_xref_panther.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_xref_panther.csv\n Name: rat_protein_xref_panther.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"9764\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"6509\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"6509\"", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/rat_protein_xref_panther.csv" }