{ "bcoid": "GLY_000256", "title": "Human Protein Citations (RefSeq)", "description": "The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped ...", "filename": "human_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q86SU0-1...", "29224747..." ], [ "Q86VP1-1...", "10435631..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "Q86SU0-1", "29224747", "Next-generation sequencing identifies three novel missense variants in ILDR1 and MYO6 genes in an Iranian family with hearing loss with review of the literature.", "International journal of pediatric otorhinolaryngology", "2017 Dec", "Talebi F, Mardasi FG, Asl JM, Sayahi M" ], [ "Q86VP1-1", "10435631", "The zinc finger protein A20 interacts with a novel anti-apoptotic protein which is cleaved by specific caspases.", "Oncogene", "1999 Jul 22", "De Valck D, Jin DY, Heyninck K, Van de Craen M, Contreras R, Fiers W, Jeang KT, Beyaert R" ], [ "P22304-1", "28543354", "Genotype-phenotype relationship in mucopolysaccharidosis II: predictive power of IDS variants for the neuronopathic phenotype.", "Developmental medicine and child neurology", "2017 Oct", "Vollebregt AAM, Hoogeveen-Westerveld M, Kroos MA, Oussoren E, Plug I, Ruijter GJ, van der Ploeg AT, Pijnappel WWMP" ], [ "Q6UXH1-1", "12137942", "Identification, genomic organization and mRNA expression of CRELD1, the founding member of a unique family of matricellular proteins.", "Gene", 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Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_9606.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/source/refseq_protein_all_9606.gpff\n Name: human_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/human_protein_citations_refseq.csv\n Name: human_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"17317\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"74241\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"2676\"\n Name: \"authors\"\n Description: \"Authors of the associated publications\"\n Unique Values: \"73822\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"7882\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"74255\"", "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/human_protein_citations_refseq.csv" }