{
    "bcoid": "GLY_000054",
    "title": "Mouse Protein Isoform sequences (UniProtKB)",
    "description": "The Mouse Protein Isoform sequences (UniProtKB) dataset contains mouse [taxid:10090] protein fasta sequences ...",
    "filename": "mouse_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Protein",
        "tags": "All Protein Sequences",
        "file_type": "fasta",
        "status": "Reviewed",
        "scope": "internal"
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>sp|Q8BH24-1|TM9S4_MOUSE Isoform 1 of Transmembrane 9 superfamily member 4 OS=Mus musculus OX=10090 GN=Tm9sf4 PE=1 SV=1 CANONICAL=Q8BH24-1\nMAAAMIWWPRFLLLLCLTCKGSTFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYS\nLPFCQPIKITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCNQSNKPITLTVEQSRL\nVAERITEEYYVHLIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGFTDVNKIYL\nHNHLSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKTGEKSSCTLPEGANSLPQE\nIDPTKENQLYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSM\nIIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMIL\nIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATL\nYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDN\nPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFL\nVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEF\nIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID\n\n\n>tr|F8WHT8-1|MEGF9_MOUSE Isoform 1 of Multiple epidermal growth factor-like domains protein 9 OS=Mus musculus OX=10090 GN=Megf9 PE=2 SV=1 CANONICAL=Q8BH27-1\nMNGGAERAMRSLPSLGGLALLCCAAAAAASTASAGNVTGGGGAEGQVVPSPSPGLRDQAS\nSPFPKTAAPTAQAPRTGPPRTTVRKTGATTPSAGSPEIIPPLRTSAQPAATPFPALDLSP\nATPSEDGHTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNS\nSGVPPTAPVTEAPTSPPPEHMCNCSEVGSLDVKRCNQTTGQCDCHVGYQGLHCDTCKEGF\nYLNHTVGLCLPCHCSPHGAVSILCNRGETVNLQLFPFESVNKHSLLQPPPSHLYH\n\n\n>sp|Q8BH27-1|MEGF9_MOUSE Isoform 1 of Multiple epidermal growth factor-like domains protein 9 OS=Mus musculus OX=10090 GN=Megf9 PE=2 SV=1 CANONICAL=Q8BH27-1\nMNGGAERAMRSLPSLGGLALLCCAAAAAASTASAGNVTGGGGAEGQVVPSPSPGLRDQAS\nSPFPKTAAPTAQAPRTGPPRTTVRKTGATTPSAGSPEIIPPLRTSAQPAATPFPALDLSP\nATPSEDGHTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNS\nSGVPPTAPVTEAPTSPPPEHMCNCSEVGSLDVKRCNQTTGQCDCHVGYQGLHCDTCKEGF\nYLNHTVGLCLPCHCSPHGAVSILCNSSGNCQCKVGVTGSMCDKCQDGHYGFGKTGCLPCQ\nCNNRSDSCDVHTGACLNCQENSKGEHCEECKEGFYPSPDAAKQCHRCPCSAVTSTGNCTI\nESGELEPTCDQCKDGYTGQNCNKCENGYYNSDSICTQCECHGHVDPIKTPKICKPESGEC\nINCLHNTTGFWCEKCLEGYVRDLQRNCIKQEVIVPTPEGSTILVSNASLTTSVPTPVINS\nTFAPTTLQTIFAVSSSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQ\nNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDANEVAPNGQLTLTTPIHNYKA\n\n\n>sp|Q8BH26-1|TM251_MOUSE Isoform 1 of Transmembrane protein 251 OS=Mus musculus OX=10090 GN=Tmem251 PE=2 SV=1 CANONICAL=Q8BH26-1\nMPKAPDCSELSDSCSLAGGTGRFSGPLHRAWRMMNFRQRMGWIGVGLYLLASAAAFYYVF\nEINETYNRLALEHILQHPEEPREGTTWTHSLKARLLSLPFWLWTIIFLIPYLQMFLFLYS\nCTRADPKTVGYCIIPICLAVICNRHQAFVKASNQISRLQLIDT\n\n\n>tr|Q8VF69-1|Q8VF69_MOUSE Isoform 1 of Olfactory receptor OS=Mus musculus OX=10090 GN=Olfr223 PE=2 SV=1 CANONICAL=Q8VF69-1\nMQVTTERQNVSFPDTFVLVGFSDHPWLEMPLFGVLLISYIFTMIGNSSIIVLSLVEPRLQ\nTPMYFFLDNLSLLDLCVTCTIVPQLLVNLWGPEKTIASWSCIAQAYLFHWTSCTESALLA\nVMAFDRYVAICCPLRYVLIMHLWACVWLAAVCWASGLANSLVQATLTLYLTLCAKNTLDH\nFFCEVPALIKLACSDTTTNDLSLALGAIPFGIVSPLTVLISYIFIARAVLKLPSAEGRRK\nALSTCTSHLLVVTMYFGPGMYTYLQPPGNNTQSEFLSLFYCVFTPLLNPLIYTLRNKDVK\nEAWKKVLTSQSKGISLKGQ\n\n\n>tr|F6RPJ9-1|IDE_MOUSE Isoform 1 of Insulin-degrading enzyme OS=Mus musculus OX=10090 GN=Ide PE=1 SV=1 CANONICAL=Q9JHR7-1\nXFPKQTYSTMSNPAIQRIEDQIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDV\nHIGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFD\nVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPK\nHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVV\nKLFSEVENKNVPLPEFPEHPFQEEHLRQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGH\nYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTEEGLLHVEDIIL\nHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTA\nEYLLEEFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTDRTEQWYGTQYKQEAIPEDIIQK\nWQNADLNGKFKLPTKNEFIPTNFEILSLEKDATPYPALIKDTAMSKLWFKQDDKFFLPKA\nCLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVK\nGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE\nVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGVMQMVEDTLIEH\nAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQSTSENMFLELFC\nQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEK\nAIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLT\nKDDIIRFYQEMLAVDAPRRHKVSVHVLAREMDSCPVVGEFPSQNDINLSEAPPLPQPEVI\nHNMTEFKRGLPLFPLVKPHINFMAAKL\n\n\n>sp|Q9JHR7-1|IDE_MOUSE Isoform 1 of Insulin-degrading enzyme OS=Mus musculus OX=10090 GN=Ide PE=1 SV=1 CANONICAL=Q9JHR7-1\nMRNGLVWLLHPALPGTLRSILGARPPPAKRLCGFPKQTYSTMSNPAIQRIEDQIVKSPED\nKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPGLSHFCEHMLFLGTKK\nYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLLDASCKD\nREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREE\nLLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLRQ\nLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGYYLGHLIGHEGPGSLLSELKSKGWVNTLV\nGGQKEGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAV\nAFRFKDKERPRGYTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAI\nVSKSFEGKTDRTEQWYGTQYKQEAIPEDVIQKWQNADLNGKFKLPTKNEFIPTNFEILSL\nEKDATPYPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELL\nKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKRYNDKQPILLKKITEKMATFEIDKKRFE\nIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLL\nSRLHIEALLHGNITKQAALGVMQMVEDTLIEHAHTKPLLPSQLVRYREVQLPDRGWFVYQ\nQRNEVHNNCGIEIYYQTDMQSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRA\nNGIQGLRFIIQSEKPPHYLESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRRLDKPKKL\nSAECAKYWGEIISQQYNYDRDNIEVAYLKTLTKDDIIRFYQEMLAVDAPRRHKVSVHVLA\nREMDSCPVVGEFPSQNDINLSEAPPLPQPEVIHNMTEFKRGLPLFPLVKPHINFMAAKL\n\n\n>tr|Q7TRE2-1|Q8VF63_MOUSE Isoform 1 of Olfactory receptor MOR162-7 OS=Mus musculus OX=10090 GN=Olfr881 PE=3 SV=1 CANONICAL=Q8VF63-1\nMALGNDSSVKEFILLGLTQQPELQLPLFFFFLGVYIFSVVGNLGLIVLIVLNPHLQTPMY\nYFLFNLSFTDLCYSSVITPKMLVSFVKQNIISHAECMTQLFFFCFFVIDECYILTAMAYD\nRYAAICKPLLYQVTMSHRVCLLMTVGVYVMGFVEAMAHTASMVHLIFCDSNIINHYMCEI\nNALLKLSCTSTSINELVVYIVVGFNVIVPTLTIFITYTLILFNILSIHSAEGRSKAFSTC\nGSHMIAVSLFFGAAAFMYLKPSSASEDEDKVSTIFYTIMGPMLNPFIYSIRNKDVHIALK\nKTLKRSIFI\n\n\n>tr|Q8VF63-1|Q8VF63_MOUSE Isoform 1 of Olfactory receptor MOR162-7 OS=Mus musculus OX=10090 GN=Olfr881 PE=3 SV=1 CANONICAL=Q8VF63-1\nMNWGRMALGNDSSVKEFILLGLTQQPELQLPLFFFFLGVYIFSVVGNLGLIVLIVLNPHL\nQTPMYYFLFNLSFTDLCYSSVITPKMLVSFVKQNIISHAECMTQLFFFCFFVIDECYILT\nAMAYDRYAAICKPLLYQVTMSHRVCLLMTVGVYVMGFVEAMAHTASMVHLIFCDSNIINH\nYMCEINALLKLSCTSTSINELVVYIVVGFNVIVPTLTIFITYTLILFNILSIHSAEGRSK\nAFSTCGSHMIAVSLFFGAAAFMYLKPSSASEDEDKVSTIFYTIMGPMLNPFIYSIRNKDV\nHIALKKTLKRSIFI\n\n\n</pre>"
    },
    "readme": "Name\n   - Mouse Protein Isoform sequences (UniProtKB)\n\nVersion\n   - 1.5.18\n\nCreated on\n  - 2019-01-23T17:21:05.921192\n\nModified on\n   - 2020-04-10T12:35:29.710043\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Protein Isoform sequences (UniProtKB) dataset contains mouse [taxid:10090] protein fasta sequences for the mouse isoform accessions from the UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all mouse isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https://data.glygen.org/ln2data/releases/data/v-1.5.18/source/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_allsequences.fasta\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_allsequences.fasta\n      Name: mouse_protein_allsequences.stat.csv\n      URI: http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"62870\"",
    "downloadurl": "/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_allsequences.fasta"
}