{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-hepatitis-c-virus-1a.nt", 
                    "filename": "uniprot-proteome-hepatitis-c-virus-1a.nt"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_masterlist.csv", 
                    "filename": "hcv1a_protein_masterlist.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_brenda.csv", 
                    "filename": "hcv1a_protein_xref_brenda.csv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_brenda.stat.csv", 
                    "filename": "hcv1a_protein_xref_brenda.stat.csv"
                }
            }
        ]
    }, 
    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000386/1.5.18", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Hepatitis C virus (genotype 1a, isolate H)", 
                        "category_name": "species"
                    }, 
                    {
                        "category_value": "Protein", 
                        "category_name": "molecule"
                    }, 
                    {
                        "category_value": "Brenda", 
                        "category_name": "tags"
                    }, 
                    {
                        "category_value": "csv", 
                        "category_name": "file_type"
                    }, 
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }, 
                    {
                        "category_value": "internal", 
                        "category_name": "scope"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "HCV1a UniProtKB Xref BRENDA", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }, 
            {
                "affiliation": "EMBL-EBI-UniProt", 
                "contribution": [
                    "contributedBy"
                ], 
                "name": "Maria Martin", 
                "email": "martin@ebi.ac.uk"
            }, 
            {
                "affiliation": "EMBL-EBI-UniProt", 
                "contribution": [
                    "contributedBy"
                ], 
                "name": "Preethi Vasudev", 
                "email": "pvasudev@ebi.ac.uk"
            }
        ], 
        "created": "2020-03-15T12:38:06.673108", 
        "modified": "2020-04-09T17:56:27.770821", 
        "version": "1.5.18"
    }, 
    "description_domain": {
        "keywords": [
            "enzyme", 
            "ec number", 
            "BRENDA", 
            "cross-reference"
        ], 
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_masterlist.csv", 
                        "filename": "hcv1a_protein_masterlist.csv"
                    }, 
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-hepatitis-c-virus-1a.nt", 
                        "filename": "uniprot-proteome-hepatitis-c-virus-1a.nt"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/reviewed/hcv1a_protein_xref_brenda.csv", 
                        "filename": "hcv1a_protein_xref_brenda.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "The script loads the UniProtKB canonical accessions that are cross-referenced to BRENDA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset"
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
            {
                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py", 
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    }, 
    "error_domain": {
        "empirical_error": {}, 
        "algorithmic_error": {}, 
        "emperical_error": {}
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The Hepatitis C virus (genotype 1a, isolate H) UniprotKB Xref BRENDA contains hcv1a [taxid:11108] UniProtKB canonical accessions cross-referenced to BRENDA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen", 
        "BRENDA is an information system representing one of the most comprehensive enzyme repositories. It is an electronic resource that comprises molecular and biochemical information on enzymes that have been classified by the IUBMB."
    ], 
    "etag": "1c5115dfde4cc9e4c292d911408092e5", 
    "_id": {
        "$oid": "5e6e59eef5c47b5a095a2c4f"
    }
}